Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1552 and SMa1554 overlap by 4 nucleotides SMa1554 and SMa1556 overlap by 68 nucleotides SMa1556 and SMa1558 overlap by 14 nucleotides
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491
SMa1554
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
SMa1558: SMa1558 - Sensor histidine kinase, at 862,096 to 864,222
SMa1558
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.597 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.630 kb on + strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.706 kb on - strand at 859.796 kb on - strand at 859.883 kb on - strand at 859.883 kb on - strand at 859.897 kb on - strand, within SMa1554 at 859.897 kb on - strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.950 kb on - strand, within SMa1554 at 860.067 kb on - strand, within SMa1554 at 860.079 kb on + strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.489 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.524 kb on + strand at 860.524 kb on + strand at 860.643 kb on + strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.694 kb on - strand, within SMa1556 at 861.444 kb on + strand, within SMa1556 at 861.975 kb on + strand at 861.975 kb on + strand at 861.976 kb on - strand at 861.976 kb on - strand at 861.976 kb on - strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.101 kb on - strand at 862.101 kb on - strand at 862.127 kb on + strand at 862.127 kb on + strand at 862.128 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.258 kb on - strand at 862.258 kb on - strand at 862.350 kb on - strand, within SMa1558 at 862.350 kb on - strand, within SMa1558 at 862.385 kb on + strand, within SMa1558 at 862.962 kb on - strand, within SMa1558
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 859,597 - SMa1552 0.83 -0.4 859,597 - SMa1552 0.83 -1.8 859,630 + SMa1552 0.86 +0.2 859,631 - SMa1552 0.86 -2.4 859,631 - SMa1552 0.86 -1.9 859,631 - SMa1552 0.86 -2.9 859,631 - SMa1552 0.86 +1.4 859,706 - +0.8 859,796 - +0.2 859,883 - -0.7 859,883 - -0.6 859,897 - SMa1554 0.11 -2.2 859,897 - SMa1554 0.11 +0.8 859,949 + SMa1554 0.19 -0.1 859,949 + SMa1554 0.19 -0.5 859,949 + SMa1554 0.19 -0.3 859,950 - SMa1554 0.19 +0.1 860,067 - SMa1554 0.36 +0.4 860,079 + SMa1554 0.38 +0.5 860,139 - SMa1554 0.47 +0.9 860,139 - SMa1554 0.47 -0.1 860,489 + -0.4 860,496 + +0.6 860,496 + -0.5 860,496 + -0.4 860,524 + -0.7 860,524 + -0.2 860,643 + SMa1556 0.13 -3.4 860,644 - SMa1556 0.13 -0.3 860,644 - SMa1556 0.13 -0.9 860,644 - SMa1556 0.13 -1.4 860,644 - SMa1556 0.13 +1.9 860,694 - SMa1556 0.16 -0.5 861,444 + SMa1556 0.60 -1.4 861,975 + +1.5 861,975 + +0.7 861,976 - +0.4 861,976 - -0.5 861,976 - -1.2 862,100 + -1.3 862,100 + -0.1 862,100 + -1.0 862,100 + -0.4 862,101 - -0.8 862,101 - -2.8 862,127 + +0.1 862,127 + -0.6 862,128 - +0.6 862,245 - +1.4 862,245 - -1.1 862,245 - +0.1 862,245 - +1.0 862,258 - +1.9 862,258 - +0.1 862,350 - SMa1558 0.12 -0.7 862,350 - SMa1558 0.12 -2.1 862,385 + SMa1558 0.14 -1.8 862,962 - SMa1558 0.41 -0.1
Or see this region's nucleotide sequence