Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1550 and SMa1552 are separated by 153 nucleotides SMa1552 and SMa1554 overlap by 4 nucleotides SMa1554 and SMa1556 overlap by 68 nucleotides
SMa1550: SMa1550 - Response regulator, at 857,628 to 858,311
SMa1550
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491
SMa1554
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.472 kb on - strand at 857.472 kb on - strand at 857.478 kb on - strand at 857.563 kb on + strand at 857.622 kb on - strand at 857.627 kb on - strand at 857.651 kb on + strand at 857.652 kb on - strand at 857.718 kb on - strand, within SMa1550 at 857.726 kb on + strand, within SMa1550 at 857.940 kb on + strand, within SMa1550 at 857.941 kb on - strand, within SMa1550 at 858.009 kb on + strand, within SMa1550 at 858.098 kb on + strand, within SMa1550 at 858.099 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.309 kb on + strand at 858.309 kb on + strand at 858.310 kb on - strand at 858.322 kb on + strand at 858.334 kb on + strand at 858.352 kb on - strand at 858.375 kb on - strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.396 kb on - strand at 858.715 kb on + strand, within SMa1552 at 858.715 kb on + strand, within SMa1552 at 858.716 kb on - strand, within SMa1552 at 858.810 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 859.116 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.293 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.630 kb on + strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.706 kb on - strand at 859.796 kb on - strand at 859.883 kb on - strand at 859.883 kb on - strand at 859.897 kb on - strand, within SMa1554 at 859.897 kb on - strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.950 kb on - strand, within SMa1554 at 860.067 kb on - strand, within SMa1554 at 860.079 kb on + strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.489 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.524 kb on + strand at 860.524 kb on + strand at 860.643 kb on + strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.694 kb on - strand, within SMa1556
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 857,472 - +0.3 857,472 - +0.2 857,478 - -0.6 857,563 + -0.0 857,622 - +0.4 857,627 - +1.0 857,651 + -0.1 857,652 - -0.8 857,718 - SMa1550 0.13 +0.3 857,726 + SMa1550 0.14 +1.1 857,940 + SMa1550 0.46 -0.8 857,941 - SMa1550 0.46 +0.5 858,009 + SMa1550 0.56 -0.9 858,098 + SMa1550 0.69 +1.0 858,099 - SMa1550 0.69 +0.5 858,149 - SMa1550 0.76 -0.4 858,149 - SMa1550 0.76 +0.5 858,149 - SMa1550 0.76 -1.4 858,149 - SMa1550 0.76 -0.3 858,226 + SMa1550 0.87 +0.8 858,226 + SMa1550 0.87 -3.0 858,227 - SMa1550 0.88 -0.6 858,227 - SMa1550 0.88 -0.5 858,227 - SMa1550 0.88 +0.1 858,309 + -2.2 858,309 + +0.0 858,310 - +0.3 858,322 + -0.6 858,334 + -0.3 858,352 - +1.5 858,375 - -0.3 858,395 + +0.7 858,395 + +0.0 858,395 + -1.5 858,395 + -1.5 858,396 - +0.1 858,715 + SMa1552 0.18 +0.5 858,715 + SMa1552 0.18 +0.7 858,716 - SMa1552 0.18 +0.4 858,810 + SMa1552 0.25 +0.3 858,826 + SMa1552 0.27 +0.2 858,826 + SMa1552 0.27 +0.2 858,827 - SMa1552 0.27 +0.2 858,827 - SMa1552 0.27 +0.1 859,116 + SMa1552 0.48 +1.4 859,221 + SMa1552 0.56 -0.6 859,221 + SMa1552 0.56 -1.2 859,292 + SMa1552 0.61 -0.8 859,292 + SMa1552 0.61 -0.9 859,293 - SMa1552 0.61 +1.0 859,597 - SMa1552 0.83 -0.4 859,597 - SMa1552 0.83 -1.8 859,630 + SMa1552 0.86 +0.2 859,631 - SMa1552 0.86 -2.4 859,631 - SMa1552 0.86 -1.9 859,631 - SMa1552 0.86 -2.9 859,631 - SMa1552 0.86 +1.4 859,706 - +0.8 859,796 - +0.2 859,883 - -0.7 859,883 - -0.6 859,897 - SMa1554 0.11 -2.2 859,897 - SMa1554 0.11 +0.8 859,949 + SMa1554 0.19 -0.1 859,949 + SMa1554 0.19 -0.5 859,949 + SMa1554 0.19 -0.3 859,950 - SMa1554 0.19 +0.1 860,067 - SMa1554 0.36 +0.4 860,079 + SMa1554 0.38 +0.5 860,139 - SMa1554 0.47 +0.9 860,139 - SMa1554 0.47 -0.1 860,489 + -0.4 860,496 + +0.6 860,496 + -0.5 860,496 + -0.4 860,524 + -0.7 860,524 + -0.2 860,643 + SMa1556 0.13 -3.4 860,644 - SMa1556 0.13 -0.3 860,644 - SMa1556 0.13 -0.9 860,644 - SMa1556 0.13 -1.4 860,644 - SMa1556 0.13 +1.9 860,694 - SMa1556 0.16 -0.5
Or see this region's nucleotide sequence