Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1255 and SMa1256 overlap by 14 nucleotides SMa1256 and SMa1259 are separated by 3 nucleotides SMa1259 and SMa1261 are separated by 45 nucleotides SMa1261 and SMa1262 are separated by 356 nucleotides
SMa1255: SMa1255 - hypothetical protein, at 687,399 to 687,710
SMa1255
SMa1256: SMa1256 - hypothetical protein, at 687,697 to 688,227
SMa1256
SMa1259: SMa1259 - hypothetical protein, at 688,231 to 689,589
SMa1259
SMa1261: SMa1261 - hypothetical protein, at 689,635 to 689,952
SMa1261
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
Position (kb) 688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.304 kb on + strand at 687.371 kb on + strand at 687.372 kb on - strand at 687.414 kb on - strand at 687.414 kb on - strand at 687.437 kb on - strand, within SMa1255 at 687.458 kb on - strand, within SMa1255 at 687.475 kb on + strand, within SMa1255 at 687.509 kb on - strand at 687.579 kb on + strand, within SMa1255 at 687.579 kb on + strand, within SMa1255 at 687.579 kb on + strand, within SMa1255 at 687.580 kb on - strand, within SMa1255 at 687.580 kb on - strand, within SMa1255 at 687.586 kb on + strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.587 kb on - strand, within SMa1255 at 687.590 kb on + strand, within SMa1255 at 687.591 kb on - strand, within SMa1255 at 687.591 kb on - strand, within SMa1255 at 687.607 kb on - strand, within SMa1255 at 687.757 kb on - strand, within SMa1256 at 688.021 kb on + strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.022 kb on - strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.174 kb on + strand, within SMa1256 at 688.176 kb on + strand at 688.176 kb on + strand at 688.177 kb on - strand at 688.177 kb on - strand at 688.233 kb on - strand at 688.320 kb on + strand at 688.320 kb on + strand at 688.321 kb on - strand at 688.442 kb on + strand, within SMa1259 at 688.530 kb on - strand, within SMa1259 at 688.565 kb on + strand, within SMa1259 at 688.706 kb on + strand, within SMa1259 at 688.706 kb on + strand, within SMa1259 at 688.707 kb on - strand, within SMa1259 at 688.779 kb on - strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.060 kb on + strand, within SMa1259 at 689.061 kb on - strand, within SMa1259 at 689.179 kb on - strand, within SMa1259 at 689.230 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.263 kb on + strand, within SMa1259 at 689.591 kb on + strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.592 kb on - strand at 689.726 kb on + strand, within SMa1261 at 689.727 kb on - strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.808 kb on + strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.809 kb on - strand, within SMa1261 at 689.997 kb on + strand at 689.997 kb on + strand at 689.997 kb on + strand at 690.243 kb on + strand at 690.243 kb on + strand at 690.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 687,304 + +0.2 687,371 + +1.9 687,372 - -0.7 687,414 - -0.3 687,414 - +0.1 687,437 - SMa1255 0.12 +0.4 687,458 - SMa1255 0.19 -3.2 687,475 + SMa1255 0.24 -0.0 687,509 - +1.3 687,579 + SMa1255 0.58 -0.9 687,579 + SMa1255 0.58 -2.1 687,579 + SMa1255 0.58 +0.3 687,580 - SMa1255 0.58 -0.1 687,580 - SMa1255 0.58 -0.3 687,586 + SMa1255 0.60 +0.2 687,587 - SMa1255 0.60 +0.4 687,587 - SMa1255 0.60 -0.3 687,587 - SMa1255 0.60 -0.5 687,587 - SMa1255 0.60 +0.8 687,587 - SMa1255 0.60 -1.0 687,590 + SMa1255 0.61 -1.0 687,591 - SMa1255 0.62 +0.3 687,591 - SMa1255 0.62 -0.1 687,607 - SMa1255 0.67 -0.0 687,757 - SMa1256 0.11 -1.5 688,021 + SMa1256 0.61 +0.8 688,022 - SMa1256 0.61 -0.5 688,022 - SMa1256 0.61 -0.9 688,022 - SMa1256 0.61 +0.9 688,174 + SMa1256 0.90 -1.9 688,174 + SMa1256 0.90 +1.0 688,174 + SMa1256 0.90 -0.3 688,176 + -0.1 688,176 + -0.9 688,177 - -0.5 688,177 - -1.3 688,233 - -1.0 688,320 + -0.1 688,320 + -1.9 688,321 - -0.2 688,442 + SMa1259 0.16 -0.4 688,530 - SMa1259 0.22 -0.1 688,565 + SMa1259 0.25 -0.3 688,706 + SMa1259 0.35 -0.8 688,706 + SMa1259 0.35 -0.3 688,707 - SMa1259 0.35 -0.1 688,779 - SMa1259 0.40 +0.6 689,060 + SMa1259 0.61 -3.5 689,060 + SMa1259 0.61 -2.1 689,061 - SMa1259 0.61 -0.8 689,179 - SMa1259 0.70 -0.7 689,230 + SMa1259 0.74 -1.1 689,263 + SMa1259 0.76 +0.1 689,263 + SMa1259 0.76 -2.5 689,591 + +2.3 689,592 - -0.6 689,592 - +1.3 689,592 - +0.4 689,726 + SMa1261 0.29 +0.6 689,727 - SMa1261 0.29 +0.9 689,808 + SMa1261 0.54 -0.3 689,808 + SMa1261 0.54 +0.1 689,809 - SMa1261 0.55 +0.4 689,809 - SMa1261 0.55 +0.2 689,997 + -0.8 689,997 + -1.3 689,997 + +0.6 690,243 + +0.4 690,243 + -0.2 690,336 - -0.9
Or see this region's nucleotide sequence