Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1209 and SMa1210 overlap by 4 nucleotides SMa1210 and SMa1211 overlap by 4 nucleotides
SMa1209: SMa1209 - FixI1 ATPase, at 662,787 to 665,060
SMa1209
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
Position (kb) 665
666 Strain fitness (log2 ratio) -2
-1
0
1 at 664.146 kb on + strand, within SMa1209 at 664.239 kb on + strand, within SMa1209 at 664.351 kb on + strand, within SMa1209 at 664.456 kb on + strand, within SMa1209 at 664.534 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.552 kb on + strand, within SMa1209 at 664.553 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.921 kb on + strand at 664.938 kb on + strand at 664.939 kb on - strand at 665.042 kb on + strand at 665.042 kb on + strand at 665.400 kb on + strand, within SMa1210 at 665.400 kb on + strand, within SMa1210 at 665.401 kb on - strand at 665.401 kb on - strand, within SMa1210 at 665.806 kb on - strand, within SMa1211 at 665.806 kb on - strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.850 kb on - strand, within SMa1211 at 666.125 kb on + strand, within SMa1211 at 666.126 kb on - strand, within SMa1211 at 666.369 kb on - strand, within SMa1211 at 666.394 kb on + strand at 666.394 kb on + strand, within SMa1211 at 666.395 kb on - strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.470 kb on + strand, within SMa1211 at 666.471 kb on - strand, within SMa1211 at 666.533 kb on - strand, within SMa1211
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 664,146 + SMa1209 0.60 -1.2 664,239 + SMa1209 0.64 -0.2 664,351 + SMa1209 0.69 +0.8 664,456 + SMa1209 0.73 +1.6 664,534 + SMa1209 0.77 -0.5 664,552 + SMa1209 0.78 +1.0 664,552 + SMa1209 0.78 -0.1 664,553 - SMa1209 0.78 -1.0 664,794 - SMa1209 0.88 +0.2 664,794 - SMa1209 0.88 -1.5 664,921 + -0.3 664,938 + +0.1 664,939 - -0.1 665,042 + -0.3 665,042 + -1.1 665,400 + SMa1210 0.68 -0.7 665,400 + SMa1210 0.68 +0.4 665,401 - -0.3 665,401 - SMa1210 0.68 -1.5 665,806 - SMa1211 0.16 -2.3 665,806 - SMa1211 0.16 -1.5 665,849 + SMa1211 0.19 -0.3 665,849 + SMa1211 0.19 -0.2 665,849 + SMa1211 0.19 +0.5 665,850 - SMa1211 0.19 -0.2 666,125 + SMa1211 0.36 -0.1 666,126 - SMa1211 0.36 -0.2 666,369 - SMa1211 0.52 -0.5 666,394 + +1.3 666,394 + SMa1211 0.53 -0.3 666,395 - SMa1211 0.53 +1.1 666,429 + SMa1211 0.55 -1.5 666,429 + SMa1211 0.55 +0.1 666,429 + SMa1211 0.55 -0.2 666,429 + SMa1211 0.55 -0.3 666,429 + SMa1211 0.55 +0.4 666,430 - SMa1211 0.55 -0.7 666,430 - SMa1211 0.55 +1.3 666,430 - SMa1211 0.55 +0.5 666,430 - SMa1211 0.55 -2.5 666,430 - SMa1211 0.55 -0.0 666,430 - SMa1211 0.55 -0.9 666,431 + SMa1211 0.55 -0.1 666,431 + SMa1211 0.55 -0.0 666,431 + SMa1211 0.55 -0.9 666,431 + SMa1211 0.55 -0.3 666,431 + SMa1211 0.55 +1.3 666,432 - SMa1211 0.56 -0.2 666,432 - SMa1211 0.56 +0.3 666,432 - SMa1211 0.56 +0.6 666,432 - SMa1211 0.56 +1.2 666,432 - SMa1211 0.56 +1.3 666,432 - SMa1211 0.56 -0.7 666,470 + SMa1211 0.58 -1.2 666,471 - SMa1211 0.58 +0.3 666,533 - SMa1211 0.62 +0.7
Or see this region's nucleotide sequence