Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1122 and SMa1124 are separated by 3 nucleotides SMa1124 and SMa1126 are separated by 19 nucleotides
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
SMa1126: SMa1126 - Protease, at 613,774 to 614,892
SMa1126
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 611.629 kb on + strand, within SMa1122 at 611.893 kb on + strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 612.210 kb on + strand, within SMa1122 at 612.217 kb on - strand, within SMa1122 at 612.253 kb on + strand, within SMa1122 at 612.254 kb on - strand, within SMa1122 at 612.378 kb on + strand at 612.378 kb on + strand at 612.442 kb on - strand at 612.549 kb on + strand at 612.549 kb on + strand at 612.550 kb on - strand at 612.625 kb on - strand at 612.625 kb on - strand at 612.767 kb on + strand, within SMa1124 at 613.038 kb on + strand, within SMa1124 at 613.082 kb on - strand, within SMa1124 at 613.740 kb on - strand at 613.869 kb on - strand at 614.146 kb on + strand, within SMa1126 at 614.255 kb on + strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.429 kb on - strand, within SMa1126 at 614.704 kb on + strand, within SMa1126
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 611,629 + SMa1122 0.61 -0.6 611,893 + SMa1122 0.72 +0.5 611,947 - SMa1122 0.74 -2.7 611,947 - SMa1122 0.74 -0.3 612,210 + SMa1122 0.86 -0.6 612,217 - SMa1122 0.86 +0.5 612,253 + SMa1122 0.87 +0.1 612,254 - SMa1122 0.87 +0.0 612,378 + -0.2 612,378 + -1.2 612,442 - +3.3 612,549 + -0.1 612,549 + -0.5 612,550 - +0.2 612,625 - +2.2 612,625 - -0.8 612,767 + SMa1124 0.18 +0.6 613,038 + SMa1124 0.40 +1.5 613,082 - SMa1124 0.44 +0.4 613,740 - -0.2 613,869 - +0.1 614,146 + SMa1126 0.33 -1.1 614,255 + SMa1126 0.43 -0.1 614,290 - SMa1126 0.46 -2.1 614,290 - SMa1126 0.46 +0.3 614,291 + SMa1126 0.46 +0.7 614,291 + SMa1126 0.46 +0.1 614,292 - SMa1126 0.46 +0.0 614,292 - SMa1126 0.46 +0.3 614,292 - SMa1126 0.46 +0.7 614,292 - SMa1126 0.46 -0.2 614,429 - SMa1126 0.59 -2.8 614,704 + SMa1126 0.83 -0.3
Or see this region's nucleotide sequence