Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0958 and SMa0959 overlap by 4 nucleotides SMa0959 and SMa0961 are separated by 20 nucleotides SMa0961 and SMa0964 are separated by 47 nucleotides
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
SMa0959: SMa0959 - 3-ketoacyl-ACP reductase, at 537,885 to 538,661
SMa0959
SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404
SMa0961
SMa0964: SMa0964 - hypothetical protein, at 539,452 to 539,682
SMa0964
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 537.133 kb on + strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.356 kb on + strand, within SMa0958 at 537.368 kb on + strand, within SMa0958 at 537.447 kb on + strand, within SMa0958 at 537.609 kb on + strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.813 kb on - strand at 538.102 kb on + strand, within SMa0959 at 538.102 kb on + strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.334 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.589 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.702 kb on - strand at 538.702 kb on - strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.704 kb on - strand at 538.705 kb on + strand at 538.706 kb on - strand at 538.801 kb on + strand, within SMa0961 at 538.866 kb on - strand, within SMa0961 at 538.934 kb on - strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.088 kb on + strand, within SMa0961 at 539.089 kb on - strand, within SMa0961 at 539.116 kb on - strand, within SMa0961 at 539.136 kb on + strand, within SMa0961 at 539.151 kb on + strand, within SMa0961 at 539.272 kb on + strand, within SMa0961 at 539.273 kb on - strand, within SMa0961 at 539.317 kb on + strand, within SMa0961 at 539.328 kb on + strand, within SMa0961 at 539.482 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964 at 539.543 kb on + strand, within SMa0964
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 536,927 - SMa0958 0.44 -0.0 536,927 - SMa0958 0.44 +0.5 536,927 - SMa0958 0.44 -0.1 536,992 + SMa0958 0.48 -0.2 536,992 + SMa0958 0.48 -1.0 536,993 - SMa0958 0.48 -1.6 536,993 - SMa0958 0.48 +0.4 537,133 + SMa0958 0.56 -0.5 537,134 - SMa0958 0.56 +0.2 537,134 - SMa0958 0.56 +0.9 537,134 - SMa0958 0.56 +0.4 537,183 - SMa0958 0.59 +2.4 537,183 - SMa0958 0.59 +0.6 537,259 + SMa0958 0.63 -1.9 537,259 + SMa0958 0.63 -0.6 537,260 - SMa0958 0.63 +0.3 537,260 - SMa0958 0.63 -0.8 537,356 + SMa0958 0.69 +0.9 537,368 + SMa0958 0.70 -0.3 537,447 + SMa0958 0.74 -0.5 537,609 + SMa0958 0.84 +1.4 537,610 - SMa0958 0.84 +1.4 537,610 - SMa0958 0.84 +0.6 537,679 + SMa0958 0.88 -0.5 537,679 + SMa0958 0.88 +1.2 537,813 - -0.3 538,102 + SMa0959 0.28 +0.9 538,102 + SMa0959 0.28 +0.9 538,103 - SMa0959 0.28 -0.0 538,103 - SMa0959 0.28 -2.4 538,103 - SMa0959 0.28 -0.8 538,171 + SMa0959 0.37 -1.7 538,171 + SMa0959 0.37 -0.5 538,334 + SMa0959 0.58 -0.3 538,374 + SMa0959 0.63 +0.4 538,374 + SMa0959 0.63 +1.0 538,374 + SMa0959 0.63 -0.6 538,375 - SMa0959 0.63 +0.3 538,375 - SMa0959 0.63 +1.1 538,375 - SMa0959 0.63 -1.1 538,508 - SMa0959 0.80 -0.6 538,508 - SMa0959 0.80 -2.3 538,589 + -0.6 538,701 + -0.1 538,701 + +0.4 538,701 + +0.3 538,702 - -0.6 538,702 - -0.9 538,703 + -0.2 538,703 + -2.0 538,703 + -0.1 538,703 + +0.3 538,703 + -0.1 538,704 - -0.9 538,705 + +0.9 538,706 - -0.9 538,801 + SMa0961 0.16 -0.4 538,866 - SMa0961 0.25 -2.3 538,934 - SMa0961 0.35 -1.2 539,088 + SMa0961 0.56 +1.3 539,088 + SMa0961 0.56 +0.6 539,088 + SMa0961 0.56 +0.2 539,089 - SMa0961 0.56 -0.1 539,116 - SMa0961 0.60 -1.3 539,136 + SMa0961 0.63 -0.2 539,151 + SMa0961 0.65 +0.7 539,272 + SMa0961 0.82 +1.3 539,273 - SMa0961 0.82 -0.9 539,317 + SMa0961 0.88 -1.4 539,328 + SMa0961 0.89 +0.7 539,482 + SMa0964 0.13 -1.5 539,543 + SMa0964 0.39 -1.6 539,543 + SMa0964 0.39 -1.7 539,543 + SMa0964 0.39 -1.1
Or see this region's nucleotide sequence