Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0866 and SMa0868 are separated by 14 nucleotides SMa0868 and SMa0869 overlap by 4 nucleotides SMa0869 and SMa0870 are separated by 265 nucleotides
SMa0866: SMa0866 - NodC N-acetylglucosaminyltransferase, at 479,009 to 480,289
SMa0866
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736
SMa0870
Position (kb) 480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 479.304 kb on - strand, within SMa0866 at 479.470 kb on - strand, within SMa0866 at 479.505 kb on - strand, within SMa0866 at 479.521 kb on - strand, within SMa0866 at 479.650 kb on - strand, within SMa0866 at 479.653 kb on + strand, within SMa0866 at 479.654 kb on - strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.677 kb on + strand, within SMa0866 at 479.678 kb on - strand, within SMa0866 at 479.983 kb on - strand, within SMa0866 at 479.993 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.039 kb on + strand, within SMa0866 at 480.205 kb on - strand at 480.206 kb on + strand at 480.246 kb on + strand at 480.286 kb on - strand at 480.402 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.538 kb on + strand, within SMa0868 at 480.539 kb on - strand, within SMa0868 at 480.596 kb on + strand, within SMa0868 at 480.598 kb on - strand, within SMa0868 at 480.786 kb on - strand, within SMa0868 at 480.822 kb on - strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.892 kb on - strand at 480.937 kb on + strand at 480.938 kb on - strand at 480.942 kb on - strand at 480.958 kb on - strand at 481.138 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.276 kb on - strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.317 kb on - strand, within SMa0869 at 481.518 kb on + strand at 481.519 kb on - strand at 481.546 kb on + strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.654 kb on - strand at 481.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 479,304 - SMa0866 0.23 +1.6 479,470 - SMa0866 0.36 +0.1 479,505 - SMa0866 0.39 -0.2 479,521 - SMa0866 0.40 -1.1 479,650 - SMa0866 0.50 -0.2 479,653 + SMa0866 0.50 -1.0 479,654 - SMa0866 0.50 +0.4 479,677 + SMa0866 0.52 -1.5 479,677 + SMa0866 0.52 -1.3 479,678 - SMa0866 0.52 +0.6 479,983 - SMa0866 0.76 -0.1 479,993 + SMa0866 0.77 -0.4 480,039 + SMa0866 0.80 -2.1 480,039 + SMa0866 0.80 -0.9 480,205 - -2.1 480,206 + -0.4 480,246 + +0.1 480,286 - -2.6 480,402 + SMa0868 0.15 -1.7 480,538 + SMa0868 0.36 -2.9 480,538 + SMa0868 0.36 +0.0 480,538 + SMa0868 0.36 -0.5 480,539 - SMa0868 0.36 -0.6 480,596 + SMa0868 0.45 +0.3 480,598 - SMa0868 0.45 -0.1 480,786 - SMa0868 0.74 -1.4 480,822 - SMa0868 0.79 +2.3 480,889 + SMa0868 0.89 +0.3 480,889 + SMa0868 0.89 -0.5 480,891 + SMa0868 0.90 -0.1 480,891 + SMa0868 0.90 +0.9 480,892 - -1.3 480,937 + -0.1 480,938 - +0.4 480,942 - +0.8 480,958 - -0.2 481,138 + SMa0869 0.31 +0.9 481,273 + SMa0869 0.54 +0.7 481,273 + SMa0869 0.54 -1.5 481,276 - SMa0869 0.54 -0.5 481,316 + SMa0869 0.61 +0.5 481,316 + SMa0869 0.61 +1.0 481,317 - SMa0869 0.61 -0.1 481,518 + -2.1 481,519 - -0.3 481,546 + -1.4 481,547 - -0.8 481,547 - -0.5 481,547 - +1.3 481,547 - +3.0 481,654 - -0.3 481,740 + -2.7
Or see this region's nucleotide sequence