Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5036 and SMa0835 are separated by 137 nucleotides SMa0835 and SMa0838 are separated by 150 nucleotides SMa0838 and SMa0840 are separated by 294 nucleotides
SMa5036: SMa5036 - hypothetical protein, at 461,132 to 461,632
SMa5036
SMa0835: SMa0835 - hypothetical protein, at 461,770 to 462,060
SMa0835
SMa0838: SMa0838 - SyrA protein involved in EPS production, at 462,211 to 462,456
SMa0838
SMa0840: SMa0840 - NodD3 nod box-dependent transcriptional activator, at 462,751 to 463,692
SMa0840
Position (kb) 462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 461.232 kb on + strand, within SMa5036 at 461.233 kb on - strand, within SMa5036 at 461.263 kb on + strand, within SMa5036 at 461.278 kb on + strand, within SMa5036 at 461.279 kb on - strand, within SMa5036 at 461.286 kb on + strand, within SMa5036 at 461.306 kb on - strand, within SMa5036 at 461.404 kb on - strand, within SMa5036 at 461.618 kb on - strand at 461.682 kb on - strand at 461.746 kb on + strand at 461.746 kb on + strand at 461.866 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 461.942 kb on - strand, within SMa0835 at 462.019 kb on - strand, within SMa0835 at 462.036 kb on + strand at 462.036 kb on + strand at 462.037 kb on - strand at 462.056 kb on + strand at 462.057 kb on - strand at 462.127 kb on + strand at 462.234 kb on - strand at 462.240 kb on - strand, within SMa0838 at 462.341 kb on + strand, within SMa0838 at 462.342 kb on - strand, within SMa0838 at 462.508 kb on - strand at 462.694 kb on - strand at 462.750 kb on + strand at 462.923 kb on - strand, within SMa0840 at 462.970 kb on - strand, within SMa0840 at 462.970 kb on - strand, within SMa0840 at 463.029 kb on + strand, within SMa0840 at 463.041 kb on - strand, within SMa0840 at 463.054 kb on + strand, within SMa0840 at 463.055 kb on - strand, within SMa0840 at 463.122 kb on + strand, within SMa0840 at 463.122 kb on + strand, within SMa0840 at 463.123 kb on - strand, within SMa0840 at 463.123 kb on - strand, within SMa0840 at 463.123 kb on - strand, within SMa0840 at 463.123 kb on - strand, within SMa0840 at 463.124 kb on + strand, within SMa0840 at 463.124 kb on + strand, within SMa0840 at 463.216 kb on + strand, within SMa0840 at 463.216 kb on + strand, within SMa0840 at 463.216 kb on + strand, within SMa0840 at 463.217 kb on - strand, within SMa0840 at 463.363 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.454 kb on - strand, within SMa0840 at 463.454 kb on - strand, within SMa0840
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 461,232 + SMa5036 0.20 +0.6 461,233 - SMa5036 0.20 -0.8 461,263 + SMa5036 0.26 -0.1 461,278 + SMa5036 0.29 +0.5 461,279 - SMa5036 0.29 +0.1 461,286 + SMa5036 0.31 +0.0 461,306 - SMa5036 0.35 -1.9 461,404 - SMa5036 0.54 +0.6 461,618 - +0.1 461,682 - +0.7 461,746 + +0.5 461,746 + -1.1 461,866 - SMa0835 0.33 +0.8 461,942 - SMa0835 0.59 -0.1 461,942 - SMa0835 0.59 +0.3 461,942 - SMa0835 0.59 -3.3 462,019 - SMa0835 0.86 +0.5 462,036 + +2.0 462,036 + +1.4 462,037 - +0.3 462,056 + +1.2 462,057 - -0.3 462,127 + -0.3 462,234 - +0.0 462,240 - SMa0838 0.12 +1.0 462,341 + SMa0838 0.53 +0.3 462,342 - SMa0838 0.53 +1.1 462,508 - +1.1 462,694 - -0.0 462,750 + +0.1 462,923 - SMa0840 0.18 +0.4 462,970 - SMa0840 0.23 +0.2 462,970 - SMa0840 0.23 +1.4 463,029 + SMa0840 0.30 +0.1 463,041 - SMa0840 0.31 -0.9 463,054 + SMa0840 0.32 +1.0 463,055 - SMa0840 0.32 +0.5 463,122 + SMa0840 0.39 -0.4 463,122 + SMa0840 0.39 +0.1 463,123 - SMa0840 0.39 -1.7 463,123 - SMa0840 0.39 +0.8 463,123 - SMa0840 0.39 +0.1 463,123 - SMa0840 0.39 -0.1 463,124 + SMa0840 0.40 -0.4 463,124 + SMa0840 0.40 -1.3 463,216 + SMa0840 0.49 -1.5 463,216 + SMa0840 0.49 -0.2 463,216 + SMa0840 0.49 -0.1 463,217 - SMa0840 0.49 -0.0 463,363 + SMa0840 0.65 -0.2 463,453 + SMa0840 0.75 +0.7 463,453 + SMa0840 0.75 +0.2 463,453 + SMa0840 0.75 -2.9 463,454 - SMa0840 0.75 +0.4 463,454 - SMa0840 0.75 -1.1
Or see this region's nucleotide sequence