Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0512 and SMa0513 are separated by 69 nucleotides SMa0513 and SMa0514 are separated by 1 nucleotides SMa0514 and SMa0516 overlap by 4 nucleotides SMa0516 and SMa0518 overlap by 4 nucleotides
SMa0512: SMa0512 - IdnD L-idonate 5-dehydrogenase, at 276,745 to 277,776
SMa0512
SMa0513: SMa0513 - gluconate 5-dehydrogenase, at 277,846 to 278,601
SMa0513
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
SMa0518: SMa0518 - hypothetical protein, at 280,002 to 280,334
SMa0518
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 277.774 kb on + strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.845 kb on + strand at 277.845 kb on + strand at 277.846 kb on - strand at 277.846 kb on - strand at 277.846 kb on - strand at 278.308 kb on + strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.569 kb on + strand at 278.570 kb on - strand at 278.570 kb on - strand at 278.705 kb on + strand, within SMa0514 at 278.705 kb on + strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 279.298 kb on + strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.299 kb on - strand, within SMa0516 at 279.305 kb on + strand, within SMa0516 at 279.306 kb on - strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.592 kb on + strand, within SMa0516 at 279.600 kb on + strand, within SMa0516 at 279.647 kb on + strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.648 kb on - strand, within SMa0516 at 279.698 kb on + strand, within SMa0516 at 279.775 kb on + strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 277,774 + -3.1 277,779 - +0.4 277,779 - -1.8 277,779 - +0.2 277,845 + +0.4 277,845 + +0.9 277,846 - -0.7 277,846 - -0.2 277,846 - +0.0 278,308 + SMa0513 0.61 -0.4 278,309 - SMa0513 0.61 +0.1 278,309 - SMa0513 0.61 -0.1 278,569 + -1.2 278,570 - -0.9 278,570 - -0.6 278,705 + SMa0514 0.20 +1.4 278,705 + SMa0514 0.20 +1.3 278,706 - SMa0514 0.20 +0.6 278,706 - SMa0514 0.20 +0.0 279,298 + SMa0516 0.20 +0.4 279,299 - SMa0516 0.20 -0.3 279,299 - SMa0516 0.20 -2.9 279,299 - SMa0516 0.20 +0.7 279,305 + SMa0516 0.21 +1.4 279,306 - SMa0516 0.21 -2.5 279,592 + SMa0516 0.53 +0.1 279,592 + SMa0516 0.53 -0.9 279,600 + SMa0516 0.54 +0.6 279,647 + SMa0516 0.60 -0.2 279,648 - SMa0516 0.60 +0.2 279,648 - SMa0516 0.60 +0.3 279,648 - SMa0516 0.60 +0.3 279,698 + SMa0516 0.65 +0.4 279,775 + SMa0516 0.74 -3.2 279,776 - SMa0516 0.74 +1.4 279,776 - SMa0516 0.74 +0.2 279,776 - SMa0516 0.74 -0.0 279,987 + +0.4
Or see this region's nucleotide sequence