Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0424 and SMa0426 overlap by 4 nucleotides SMa0426 and SMa0429 are separated by 293 nucleotides
SMa0424: SMa0424 - ATP-dependent DNA ligase, at 229,290 to 230,330
SMa0424
SMa0426: SMa0426 - hypothetical protein, at 230,327 to 231,133
SMa0426
SMa0429: SMa0429 - hypothetical protein, at 231,427 to 232,443
SMa0429
Position (kb) 230
231
232 Strain fitness (log2 ratio) -1
0
1
2
3 at 229.357 kb on + strand at 229.357 kb on + strand at 229.469 kb on + strand, within SMa0424 at 229.469 kb on + strand, within SMa0424 at 229.470 kb on - strand, within SMa0424 at 229.520 kb on + strand, within SMa0424 at 229.524 kb on - strand, within SMa0424 at 229.662 kb on + strand, within SMa0424 at 229.882 kb on + strand, within SMa0424 at 230.598 kb on + strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.599 kb on - strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.796 kb on + strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.797 kb on - strand, within SMa0426 at 230.803 kb on + strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.804 kb on - strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.822 kb on + strand, within SMa0426 at 230.823 kb on - strand, within SMa0426 at 230.934 kb on + strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 230.989 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.029 kb on - strand, within SMa0426 at 231.105 kb on + strand at 231.106 kb on - strand at 231.263 kb on + strand at 231.263 kb on + strand at 231.417 kb on - strand at 231.428 kb on + strand at 231.428 kb on + strand at 231.429 kb on - strand at 231.448 kb on - strand at 231.448 kb on - strand at 231.543 kb on - strand, within SMa0429 at 231.609 kb on - strand, within SMa0429 at 231.995 kb on + strand, within SMa0429 at 232.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 229,357 + -0.5 229,357 + +0.1 229,469 + SMa0424 0.17 -0.1 229,469 + SMa0424 0.17 +0.4 229,470 - SMa0424 0.17 -0.9 229,520 + SMa0424 0.22 -1.4 229,524 - SMa0424 0.22 -0.0 229,662 + SMa0424 0.36 +0.4 229,882 + SMa0424 0.57 -0.1 230,598 + SMa0426 0.34 +0.3 230,599 - SMa0426 0.34 +0.2 230,599 - SMa0426 0.34 +1.4 230,796 + SMa0426 0.58 +0.9 230,796 + SMa0426 0.58 +0.0 230,796 + SMa0426 0.58 +0.5 230,797 - SMa0426 0.58 +0.6 230,797 - SMa0426 0.58 -1.6 230,803 + SMa0426 0.59 -0.1 230,804 - SMa0426 0.59 +0.4 230,804 - SMa0426 0.59 -0.5 230,804 - SMa0426 0.59 +2.8 230,822 + SMa0426 0.61 +0.2 230,822 + SMa0426 0.61 -0.7 230,823 - SMa0426 0.61 +0.6 230,934 + SMa0426 0.75 +2.0 230,989 - SMa0426 0.82 +0.7 230,989 - SMa0426 0.82 +0.3 230,989 - SMa0426 0.82 +1.3 231,029 - SMa0426 0.87 +1.9 231,029 - SMa0426 0.87 -0.3 231,105 + -1.2 231,106 - -1.7 231,263 + +1.4 231,263 + -1.3 231,417 - +0.6 231,428 + -0.1 231,428 + +0.4 231,429 - -0.4 231,448 - -0.2 231,448 - -0.3 231,543 - SMa0429 0.11 -1.6 231,609 - SMa0429 0.18 -0.6 231,995 + SMa0429 0.56 +1.4 232,005 - +2.4
Or see this region's nucleotide sequence