Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0340 and SMa0341 are separated by 223 nucleotides SMa0341 and SMa0343 are separated by 184 nucleotides SMa0343 and SMa0346 are separated by 3 nucleotides SMa0346 and SMa0347 are separated by 47 nucleotides
SMa0340: SMa0340 - TrpR binding protein WrbA, at 185,692 to 186,300
SMa0340
SMa0341: SMa0341 - hypothetical protein, at 186,524 to 186,718
SMa0341
SMa0343: SMa0343 - hypothetical protein, at 186,903 to 187,337
SMa0343
SMa0346: SMa0346 - NAD(P)H dehydrogenase, at 187,341 to 187,958
SMa0346
SMa0347: SMa0347 - LysR family transcriptional regulator, at 188,006 to 188,893
SMa0347
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.172 kb on - strand, within SMa0340 at 186.266 kb on + strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.275 kb on + strand at 186.276 kb on - strand at 186.276 kb on - strand at 186.302 kb on - strand at 186.479 kb on + strand at 186.480 kb on - strand at 186.529 kb on + strand at 186.564 kb on - strand, within SMa0341 at 186.622 kb on + strand, within SMa0341 at 186.751 kb on + strand at 186.829 kb on + strand at 186.829 kb on + strand at 186.904 kb on + strand at 187.072 kb on + strand at 187.198 kb on - strand, within SMa0343 at 187.198 kb on - strand, within SMa0343 at 187.362 kb on + strand at 187.453 kb on + strand, within SMa0346 at 187.454 kb on - strand, within SMa0346 at 187.518 kb on + strand, within SMa0346 at 187.634 kb on - strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.643 kb on - strand, within SMa0346 at 187.699 kb on + strand, within SMa0346 at 187.728 kb on - strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.967 kb on + strand at 187.986 kb on + strand at 187.986 kb on + strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.993 kb on + strand at 187.993 kb on + strand at 187.997 kb on - strand at 188.028 kb on + strand at 188.179 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.243 kb on - strand, within SMa0347 at 188.272 kb on - strand, within SMa0347
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 186,172 - SMa0340 0.79 -0.3 186,266 + -0.2 186,275 + -1.0 186,275 + +0.7 186,275 + +0.4 186,276 - +0.2 186,276 - -0.1 186,302 - +0.0 186,479 + -2.3 186,480 - +0.4 186,529 + -0.9 186,564 - SMa0341 0.21 -1.9 186,622 + SMa0341 0.50 +0.3 186,751 + +0.6 186,829 + -0.6 186,829 + +0.9 186,904 + +0.6 187,072 + +0.9 187,198 - SMa0343 0.68 -1.2 187,198 - SMa0343 0.68 -1.5 187,362 + -1.0 187,453 + SMa0346 0.18 +0.2 187,454 - SMa0346 0.18 -0.5 187,518 + SMa0346 0.29 +0.2 187,634 - SMa0346 0.47 -0.5 187,642 + SMa0346 0.49 -3.6 187,642 + SMa0346 0.49 -0.1 187,643 - SMa0346 0.49 +0.3 187,699 + SMa0346 0.58 -0.9 187,728 - SMa0346 0.63 +0.1 187,778 + SMa0346 0.71 -1.9 187,778 + SMa0346 0.71 -1.8 187,778 + SMa0346 0.71 -0.9 187,779 - SMa0346 0.71 +0.7 187,779 - SMa0346 0.71 -1.9 187,779 - SMa0346 0.71 -0.1 187,967 + -0.3 187,986 + -0.9 187,986 + +0.2 187,987 - -1.1 187,987 - -0.8 187,987 - +0.3 187,987 - +1.1 187,987 - +0.1 187,993 + +0.1 187,993 + -0.7 187,997 - -0.6 188,028 + +0.5 188,179 + SMa0347 0.19 +0.5 188,224 + SMa0347 0.25 +0.5 188,224 + SMa0347 0.25 -0.5 188,224 + SMa0347 0.25 -2.3 188,225 - SMa0347 0.25 +0.4 188,225 - SMa0347 0.25 +0.4 188,242 + SMa0347 0.27 +0.7 188,242 + SMa0347 0.27 +3.0 188,243 - SMa0347 0.27 -0.8 188,272 - SMa0347 0.30 +0.0
Or see this region's nucleotide sequence