Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0302 and SMa0303 are separated by 107 nucleotides SMa0303 and SMa0306 are separated by 92 nucleotides
SMa0302: SMa0302 - ABC transporter substrate-binding protein, at 167,430 to 168,956
SMa0302
SMa0303: SMa0303 - LysR family transcriptional regulator, at 169,064 to 169,942
SMa0303
SMa0306: SMa0306 - histidine ammonia-lyase, at 170,035 to 171,675
SMa0306
Position (kb) 169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 168.123 kb on + strand, within SMa0302 at 168.124 kb on - strand, within SMa0302 at 168.133 kb on + strand, within SMa0302 at 168.134 kb on - strand, within SMa0302 at 168.263 kb on + strand, within SMa0302 at 168.303 kb on - strand, within SMa0302 at 168.362 kb on + strand, within SMa0302 at 168.363 kb on - strand, within SMa0302 at 168.363 kb on - strand, within SMa0302 at 168.399 kb on - strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.451 kb on + strand, within SMa0302 at 168.611 kb on - strand, within SMa0302 at 168.766 kb on + strand, within SMa0302 at 168.778 kb on - strand, within SMa0302 at 168.779 kb on + strand, within SMa0302 at 168.780 kb on - strand, within SMa0302 at 168.785 kb on - strand, within SMa0302 at 168.848 kb on - strand at 169.032 kb on + strand at 169.032 kb on + strand at 169.032 kb on + strand at 169.272 kb on - strand, within SMa0303 at 169.272 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.368 kb on - strand, within SMa0303 at 169.396 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.506 kb on - strand, within SMa0303 at 169.507 kb on + strand, within SMa0303 at 169.507 kb on + strand, within SMa0303 at 169.508 kb on - strand, within SMa0303 at 169.508 kb on - strand, within SMa0303 at 169.538 kb on + strand, within SMa0303 at 169.539 kb on - strand, within SMa0303 at 169.726 kb on + strand, within SMa0303 at 169.805 kb on - strand, within SMa0303 at 169.805 kb on - strand, within SMa0303 at 169.866 kb on - strand at 169.866 kb on - strand at 170.052 kb on - strand at 170.110 kb on + strand at 170.119 kb on + strand at 170.119 kb on + strand at 170.120 kb on - strand at 170.269 kb on - strand, within SMa0306 at 170.269 kb on - strand, within SMa0306 at 170.269 kb on - strand, within SMa0306 at 170.451 kb on + strand, within SMa0306 at 170.451 kb on + strand, within SMa0306 at 170.452 kb on - strand, within SMa0306 at 170.452 kb on - strand, within SMa0306 at 170.500 kb on - strand, within SMa0306 at 170.513 kb on - strand, within SMa0306 at 170.516 kb on - strand, within SMa0306 at 170.516 kb on - strand, within SMa0306 at 170.697 kb on + strand, within SMa0306 at 170.698 kb on - strand, within SMa0306 at 170.698 kb on - strand, within SMa0306 at 170.792 kb on - strand, within SMa0306 at 170.792 kb on - strand, within SMa0306 at 170.795 kb on + strand, within SMa0306 at 170.795 kb on + strand, within SMa0306 at 170.796 kb on - strand, within SMa0306 at 170.796 kb on - strand, within SMa0306 at 170.796 kb on - strand, within SMa0306 at 170.921 kb on + strand, within SMa0306 at 170.938 kb on - strand, within SMa0306
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 168,123 + SMa0302 0.45 -0.7 168,124 - SMa0302 0.45 -0.3 168,133 + SMa0302 0.46 +0.7 168,134 - SMa0302 0.46 +0.3 168,263 + SMa0302 0.55 -0.2 168,303 - SMa0302 0.57 +0.5 168,362 + SMa0302 0.61 -1.6 168,363 - SMa0302 0.61 -1.5 168,363 - SMa0302 0.61 -0.2 168,399 - SMa0302 0.63 -1.4 168,451 + SMa0302 0.67 -0.4 168,451 + SMa0302 0.67 +0.3 168,451 + SMa0302 0.67 -2.0 168,611 - SMa0302 0.77 -0.0 168,766 + SMa0302 0.87 +0.6 168,778 - SMa0302 0.88 -0.1 168,779 + SMa0302 0.88 -1.8 168,780 - SMa0302 0.88 -1.1 168,785 - SMa0302 0.89 -0.8 168,848 - +0.5 169,032 + +0.4 169,032 + +1.0 169,032 + -0.3 169,272 - SMa0303 0.24 -1.2 169,272 - SMa0303 0.24 +0.5 169,368 - SMa0303 0.35 +0.0 169,368 - SMa0303 0.35 +1.1 169,368 - SMa0303 0.35 -0.4 169,396 - SMa0303 0.38 -0.4 169,506 - SMa0303 0.50 +0.4 169,506 - SMa0303 0.50 -1.4 169,506 - SMa0303 0.50 -1.6 169,507 + SMa0303 0.50 -1.8 169,507 + SMa0303 0.50 +1.1 169,508 - SMa0303 0.51 -0.2 169,508 - SMa0303 0.51 -0.5 169,538 + SMa0303 0.54 +0.6 169,539 - SMa0303 0.54 +0.6 169,726 + SMa0303 0.75 +0.9 169,805 - SMa0303 0.84 -2.4 169,805 - SMa0303 0.84 +0.6 169,866 - +2.8 169,866 - +0.7 170,052 - -0.3 170,110 + +1.5 170,119 + -0.5 170,119 + +1.5 170,120 - -3.0 170,269 - SMa0306 0.14 -1.8 170,269 - SMa0306 0.14 +3.1 170,269 - SMa0306 0.14 +0.2 170,451 + SMa0306 0.25 -0.0 170,451 + SMa0306 0.25 -0.2 170,452 - SMa0306 0.25 -1.5 170,452 - SMa0306 0.25 +0.1 170,500 - SMa0306 0.28 -1.7 170,513 - SMa0306 0.29 +0.0 170,516 - SMa0306 0.29 +1.0 170,516 - SMa0306 0.29 -2.4 170,697 + SMa0306 0.40 -0.6 170,698 - SMa0306 0.40 +1.5 170,698 - SMa0306 0.40 +0.1 170,792 - SMa0306 0.46 -0.2 170,792 - SMa0306 0.46 +0.7 170,795 + SMa0306 0.46 -0.3 170,795 + SMa0306 0.46 +0.1 170,796 - SMa0306 0.46 +0.9 170,796 - SMa0306 0.46 +0.9 170,796 - SMa0306 0.46 +0.6 170,921 + SMa0306 0.54 +0.2 170,938 - SMa0306 0.55 -0.4
Or see this region's nucleotide sequence