Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0265 and SMa0267 are separated by 94 nucleotides SMa0267 and SMa0270 overlap by 4 nucleotides
SMa0265: SMa0265 - dehydrogenase, at 149,384 to 150,388
SMa0265
SMa0267: SMa0267 - GntR family transcriptional regulator, at 150,483 to 151,175
SMa0267
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 149.850 kb on + strand, within SMa0265 at 150.021 kb on + strand, within SMa0265 at 150.024 kb on + strand, within SMa0265 at 150.025 kb on - strand at 150.025 kb on - strand, within SMa0265 at 150.085 kb on + strand, within SMa0265 at 150.461 kb on + strand at 150.469 kb on + strand at 150.487 kb on + strand at 150.558 kb on + strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.571 kb on - strand, within SMa0267 at 150.581 kb on + strand, within SMa0267 at 150.593 kb on + strand, within SMa0267 at 150.594 kb on - strand, within SMa0267 at 150.725 kb on + strand, within SMa0267 at 150.726 kb on - strand, within SMa0267 at 150.821 kb on + strand, within SMa0267 at 150.897 kb on - strand, within SMa0267 at 150.906 kb on + strand, within SMa0267 at 151.114 kb on - strand at 151.260 kb on - strand at 151.465 kb on - strand, within SMa0270 at 151.720 kb on + strand, within SMa0270 at 151.721 kb on - strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.802 kb on + strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.803 kb on - strand, within SMa0270 at 151.952 kb on + strand, within SMa0270 at 151.960 kb on + strand, within SMa0270
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 149,850 + SMa0265 0.46 +1.5 150,021 + SMa0265 0.63 +0.9 150,024 + SMa0265 0.64 -1.8 150,025 - +1.5 150,025 - SMa0265 0.64 -1.4 150,085 + SMa0265 0.70 +0.0 150,461 + -0.2 150,469 + -0.2 150,487 + -1.3 150,558 + SMa0267 0.11 +0.3 150,571 - SMa0267 0.13 -0.3 150,571 - SMa0267 0.13 +1.1 150,571 - SMa0267 0.13 +0.8 150,571 - SMa0267 0.13 +0.6 150,581 + SMa0267 0.14 -1.0 150,593 + SMa0267 0.16 +1.7 150,594 - SMa0267 0.16 +2.5 150,725 + SMa0267 0.35 +0.4 150,726 - SMa0267 0.35 +2.0 150,821 + SMa0267 0.49 -0.2 150,897 - SMa0267 0.60 +1.6 150,906 + SMa0267 0.61 +1.0 151,114 - +0.2 151,260 - +1.2 151,465 - SMa0270 0.18 +1.5 151,720 + SMa0270 0.34 -0.5 151,721 - SMa0270 0.34 -0.9 151,802 + SMa0270 0.40 +0.1 151,802 + SMa0270 0.40 +0.3 151,803 - SMa0270 0.40 +3.8 151,803 - SMa0270 0.40 -1.6 151,803 - SMa0270 0.40 -0.1 151,952 + SMa0270 0.49 -0.2 151,960 + SMa0270 0.49 -0.1
Or see this region's nucleotide sequence