Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0163 and SMa0164 overlap by 4 nucleotides SMa0164 and SMa0166 are separated by 21 nucleotides SMa0166 and SMa0168 are separated by 83 nucleotides SMa0168 and SMa0169 are separated by 60 nucleotides
SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724
SMa0163
SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017
SMa0164
SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569
SMa0166
SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465
SMa0168
SMa0169: SMa0169 - methyltransferase, at 92,526 to 93,311
SMa0169
Position (kb)
91
92
93 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 90.940 kb on + strand, within SMa0164 at 90.940 kb on + strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.942 kb on + strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 91.016 kb on - strand at 91.016 kb on - strand at 91.016 kb on - strand at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.659 kb on - strand at 91.723 kb on - strand at 91.723 kb on - strand at 91.796 kb on + strand, within SMa0168 at 92.166 kb on - strand, within SMa0168 at 92.166 kb on - strand, within SMa0168 at 92.202 kb on + strand, within SMa0168 at 92.275 kb on + strand, within SMa0168 at 92.276 kb on - strand, within SMa0168 at 92.319 kb on + strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.320 kb on - strand, within SMa0168 at 92.328 kb on + strand, within SMa0168 at 92.329 kb on - strand, within SMa0168 at 92.446 kb on - strand at 92.499 kb on - strand at 92.525 kb on + strand at 92.961 kb on - strand, within SMa0169 at 93.068 kb on + strand, within SMa0169 at 93.108 kb on + strand, within SMa0169 at 93.109 kb on - strand, within SMa0169 at 93.154 kb on - strand, within SMa0169 at 93.154 kb on - strand, within SMa0169 at 93.236 kb on + strand at 93.236 kb on + strand at 93.353 kb on + strand at 93.353 kb on + strand at 93.353 kb on + strand at 93.373 kb on + strand at 93.374 kb on - strand at 93.374 kb on - strand at 93.386 kb on + strand at 93.386 kb on + strand at 93.387 kb on - strand at 93.387 kb on - strand at 93.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 90,940 + SMa0164 0.74 -1.1 90,940 + SMa0164 0.74 +0.5 90,941 - SMa0164 0.74 +1.0 90,941 - SMa0164 0.74 -0.7 90,942 + SMa0164 0.74 +0.8 90,943 - SMa0164 0.75 +1.0 90,943 - SMa0164 0.75 -0.8 91,016 - +1.1 91,016 - -0.4 91,016 - -2.6 91,354 + SMa0166 0.59 -0.4 91,354 + SMa0166 0.59 +1.2 91,354 + SMa0166 0.59 -2.3 91,354 + SMa0166 0.59 -0.1 91,355 - SMa0166 0.60 +0.0 91,355 - SMa0166 0.60 -0.4 91,659 - +0.9 91,723 - -0.4 91,723 - -1.0 91,796 + SMa0168 0.18 +2.3 92,166 - SMa0168 0.63 +3.1 92,166 - SMa0168 0.63 +0.5 92,202 + SMa0168 0.68 -1.2 92,275 + SMa0168 0.77 +0.1 92,276 - SMa0168 0.77 -0.2 92,319 + SMa0168 0.82 +1.0 92,320 - SMa0168 0.82 +0.3 92,320 - SMa0168 0.82 +0.4 92,320 - SMa0168 0.82 +1.1 92,328 + SMa0168 0.83 +0.2 92,329 - SMa0168 0.83 +0.5 92,446 - -0.5 92,499 - +1.0 92,525 + +0.3 92,961 - SMa0169 0.55 -1.4 93,068 + SMa0169 0.69 -1.0 93,108 + SMa0169 0.74 -1.4 93,109 - SMa0169 0.74 +0.7 93,154 - SMa0169 0.80 +2.3 93,154 - SMa0169 0.80 -0.4 93,236 + -2.1 93,236 + +0.9 93,353 + +0.5 93,353 + -0.9 93,353 + +0.2 93,373 + -0.1 93,374 - +0.5 93,374 - +2.2 93,386 + +0.3 93,386 + +1.4 93,387 - -0.3 93,387 - +1.9 93,410 - +0.8
Or see this region's nucleotide sequence