Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20218 and SM_b20219 overlap by 1 nucleotides SM_b20219 and SM_b22002 are separated by 91 nucleotides SM_b22002 and SM_b20221 overlap by 124 nucleotides SM_b20221 and SM_b20222 are separated by 9 nucleotides
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
SM_b20219: SM_b20219 - response regulator protein, at 227,578 to 228,315
_b20219
SM_b22002: SM_b22002 - epoxide hydrolase, at 228,407 to 228,829
_b22002
SM_b20221: SM_b20221 - epoxide hydrolase, at 228,706 to 229,740
_b20221
SM_b20222: SM_b20222 - hypothetical protein, at 229,750 to 230,172
_b20222
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.544 kb on - strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.552 kb on - strand at 227.643 kb on + strand at 227.643 kb on + strand at 227.644 kb on - strand at 227.644 kb on - strand at 227.645 kb on + strand at 227.645 kb on + strand at 227.646 kb on - strand at 227.839 kb on - strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.007 kb on - strand, within SM_b20219 at 228.009 kb on - strand, within SM_b20219 at 228.174 kb on + strand at 228.249 kb on - strand at 228.249 kb on - strand at 228.373 kb on + strand at 228.373 kb on + strand at 228.374 kb on - strand at 228.501 kb on + strand, within SM_b22002 at 228.504 kb on + strand at 228.552 kb on + strand, within SM_b22002 at 228.553 kb on - strand, within SM_b22002 at 228.672 kb on + strand, within SM_b22002 at 228.710 kb on + strand at 228.759 kb on + strand at 228.759 kb on + strand at 228.960 kb on + strand, within SM_b20221 at 228.961 kb on - strand, within SM_b20221 at 229.063 kb on + strand, within SM_b20221 at 229.356 kb on + strand, within SM_b20221 at 229.356 kb on + strand, within SM_b20221 at 229.412 kb on + strand, within SM_b20221 at 229.791 kb on + strand at 229.791 kb on + strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.792 kb on - strand at 229.793 kb on + strand, within SM_b20222 at 229.793 kb on + strand, within SM_b20222 at 229.793 kb on + strand, within SM_b20222 at 229.794 kb on - strand, within SM_b20222 at 229.794 kb on - strand, within SM_b20222
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 227,445 + +0.2 227,446 - +0.1 227,446 - -0.7 227,544 - -0.6 227,551 + +0.1 227,551 + +1.1 227,551 + +0.3 227,552 - +0.4 227,643 + -0.1 227,643 + -0.5 227,644 - +0.4 227,644 - -0.4 227,645 + +0.4 227,645 + -0.5 227,646 - -3.5 227,839 - SM_b20219 0.35 +0.5 228,006 + SM_b20219 0.58 -0.6 228,006 + SM_b20219 0.58 -1.1 228,007 - SM_b20219 0.58 +0.4 228,009 - SM_b20219 0.58 -1.2 228,174 + +1.4 228,249 - -0.3 228,249 - +0.9 228,373 + +0.2 228,373 + -1.0 228,374 - -3.3 228,501 + SM_b22002 0.22 -2.1 228,504 + +1.4 228,552 + SM_b22002 0.34 +0.0 228,553 - SM_b22002 0.35 -1.3 228,672 + SM_b22002 0.63 -0.4 228,710 + -0.7 228,759 + -0.7 228,759 + -0.7 228,960 + SM_b20221 0.25 -2.5 228,961 - SM_b20221 0.25 -0.0 229,063 + SM_b20221 0.34 -0.7 229,356 + SM_b20221 0.63 -3.0 229,356 + SM_b20221 0.63 +0.0 229,412 + SM_b20221 0.68 -0.9 229,791 + -0.9 229,791 + +0.4 229,792 - -0.6 229,792 - +1.7 229,792 - -1.5 229,792 - -1.9 229,793 + SM_b20222 0.10 +0.0 229,793 + SM_b20222 0.10 -3.4 229,793 + SM_b20222 0.10 +0.4 229,794 - SM_b20222 0.10 +0.9 229,794 - SM_b20222 0.10 +1.4
Or see this region's nucleotide sequence