Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21696 and SM_b21697 overlap by 14 nucleotides SM_b21697 and SM_b21661 are separated by 542 nucleotides SM_b21661 and SM_b21711 overlap by 28 nucleotides
SM_b21696: SM_b21696 - hypothetical protein, at 672,636 to 673,517
_b21696
SM_b21697: SM_b21697 - hypothetical protein, at 673,504 to 674,031
_b21697
SM_b21661: SM_b21661 - transposase of insertion sequence ISRm10-1, orfA protein, at 674,574 to 674,957
_b21661
SM_b21711: SM_b21711 - transposase of insertion sequence ISRm10-1, orfB N-terminus protein, at 674,930 to 675,061
_b21711
Position (kb) 673
674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.504 kb on + strand at 672.555 kb on - strand at 672.635 kb on + strand at 672.768 kb on - strand, within SM_b21696 at 672.803 kb on + strand, within SM_b21696 at 672.804 kb on - strand, within SM_b21696 at 672.900 kb on + strand, within SM_b21696 at 672.900 kb on + strand, within SM_b21696 at 672.901 kb on - strand, within SM_b21696 at 672.914 kb on - strand, within SM_b21696 at 672.942 kb on + strand, within SM_b21696 at 672.942 kb on + strand, within SM_b21696 at 673.121 kb on - strand, within SM_b21696 at 673.121 kb on - strand, within SM_b21696 at 673.302 kb on + strand, within SM_b21696 at 673.302 kb on + strand, within SM_b21696 at 673.303 kb on - strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.329 kb on + strand, within SM_b21696 at 673.330 kb on - strand, within SM_b21696 at 673.595 kb on + strand, within SM_b21697 at 673.595 kb on + strand, within SM_b21697 at 673.595 kb on + strand, within SM_b21697 at 673.596 kb on - strand, within SM_b21697 at 673.596 kb on - strand, within SM_b21697 at 673.748 kb on + strand, within SM_b21697 at 673.748 kb on + strand, within SM_b21697 at 673.749 kb on - strand, within SM_b21697 at 673.780 kb on - strand, within SM_b21697 at 673.879 kb on - strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.906 kb on + strand, within SM_b21697 at 673.996 kb on + strand at 674.010 kb on + strand at 674.010 kb on + strand at 674.010 kb on + strand at 674.011 kb on - strand at 674.011 kb on - strand at 674.058 kb on + strand at 674.064 kb on + strand at 674.064 kb on + strand at 674.065 kb on - strand at 674.065 kb on - strand at 674.104 kb on + strand at 674.138 kb on + strand at 674.150 kb on + strand at 674.254 kb on + strand at 674.254 kb on + strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.255 kb on - strand at 674.300 kb on + strand at 674.356 kb on + strand at 674.384 kb on - strand at 674.401 kb on + strand at 674.401 kb on + strand at 674.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 672,504 + +0.6 672,504 + +0.1 672,504 + +0.8 672,504 + +0.8 672,504 + +1.0 672,555 - -1.1 672,635 + +0.7 672,768 - SM_b21696 0.15 -2.4 672,803 + SM_b21696 0.19 -0.2 672,804 - SM_b21696 0.19 +1.0 672,900 + SM_b21696 0.30 -2.8 672,900 + SM_b21696 0.30 -0.0 672,901 - SM_b21696 0.30 -0.7 672,914 - SM_b21696 0.32 +1.3 672,942 + SM_b21696 0.35 -0.1 672,942 + SM_b21696 0.35 -0.9 673,121 - SM_b21696 0.55 -0.5 673,121 - SM_b21696 0.55 -0.0 673,302 + SM_b21696 0.76 -0.1 673,302 + SM_b21696 0.76 +0.6 673,303 - SM_b21696 0.76 +0.1 673,329 + SM_b21696 0.79 -0.0 673,329 + SM_b21696 0.79 -0.4 673,329 + SM_b21696 0.79 +0.5 673,329 + SM_b21696 0.79 -0.6 673,329 + SM_b21696 0.79 -0.7 673,329 + SM_b21696 0.79 -1.3 673,330 - SM_b21696 0.79 -0.0 673,595 + SM_b21697 0.17 -2.9 673,595 + SM_b21697 0.17 -1.0 673,595 + SM_b21697 0.17 +0.7 673,596 - SM_b21697 0.17 -0.7 673,596 - SM_b21697 0.17 -2.1 673,748 + SM_b21697 0.46 -1.1 673,748 + SM_b21697 0.46 -1.5 673,749 - SM_b21697 0.46 -2.1 673,780 - SM_b21697 0.52 -0.7 673,879 - SM_b21697 0.71 -0.1 673,906 + SM_b21697 0.76 +0.6 673,906 + SM_b21697 0.76 +0.2 673,906 + SM_b21697 0.76 -1.4 673,996 + -0.6 674,010 + -1.6 674,010 + -1.6 674,010 + -0.0 674,011 - -1.7 674,011 - -2.5 674,058 + -0.4 674,064 + +0.7 674,064 + -0.4 674,065 - -0.3 674,065 - +0.2 674,104 + -0.7 674,138 + -0.8 674,150 + -0.0 674,254 + +0.2 674,254 + -1.1 674,255 - -1.1 674,255 - +1.0 674,255 - -2.2 674,255 - +1.6 674,300 + -1.0 674,356 + +1.0 674,384 - -0.3 674,401 + -0.2 674,401 + -0.0 674,405 - +0.1
Or see this region's nucleotide sequence