Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21678

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20896 and SM_b20897 are separated by 64 nucleotidesSM_b20897 and SM_b20898 are separated by 3 nucleotidesSM_b20898 and SM_b21678 are separated by 52 nucleotidesSM_b21678 and SM_b20899 are separated by 250 nucleotides SM_b20896: SM_b20896 - LysR family transcriptional regulator, at 1,304,441 to 1,305,349 _b20896 SM_b20897: SM_b20897 - hypothetical protein, at 1,305,414 to 1,305,866 _b20897 SM_b20898: SM_b20898 - hypothetical protein, at 1,305,870 to 1,306,280 _b20898 SM_b21678: SM_b21678 - hypothetical protein, at 1,306,333 to 1,306,524 _b21678 SM_b20899: SM_b20899 - Inositol 2-dehydrogenase (EC 1.1.1.18) (from data), at 1,306,775 to 1,307,767 _b20899 Position (kb) 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1305.591 kb on + strand, within SM_b20897at 1305.642 kb on + strand, within SM_b20897at 1305.643 kb on - strand, within SM_b20897at 1305.643 kb on - strand, within SM_b20897at 1305.865 kb on - strandat 1305.865 kb on - strandat 1305.964 kb on + strand, within SM_b20898at 1306.032 kb on + strand, within SM_b20898at 1306.069 kb on - strand, within SM_b20898at 1306.078 kb on + strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.134 kb on + strand, within SM_b20898at 1306.135 kb on - strand, within SM_b20898at 1306.135 kb on - strand, within SM_b20898at 1306.149 kb on + strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.157 kb on - strand, within SM_b20898at 1306.168 kb on + strand, within SM_b20898at 1306.168 kb on + strand, within SM_b20898at 1306.172 kb on + strand, within SM_b20898at 1306.172 kb on + strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.247 kb on + strandat 1306.247 kb on + strandat 1306.247 kb on + strandat 1306.248 kb on - strandat 1306.363 kb on + strand, within SM_b21678at 1306.364 kb on - strand, within SM_b21678at 1306.586 kb on + strandat 1306.586 kb on + strandat 1306.594 kb on - strandat 1306.993 kb on + strand, within SM_b20899at 1307.253 kb on - strand, within SM_b20899at 1307.397 kb on - strand, within SM_b20899at 1307.471 kb on + strand, within SM_b20899at 1307.471 kb on + strand, within SM_b20899at 1307.471 kb on + strand, within SM_b20899at 1307.471 kb on + strand, within SM_b20899at 1307.472 kb on - strand, within SM_b20899

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,305,591 + SM_b20897 0.39 +0.8
1,305,642 + SM_b20897 0.50 +2.3
1,305,643 - SM_b20897 0.51 -2.6
1,305,643 - SM_b20897 0.51 -1.4
1,305,865 - -0.2
1,305,865 - -1.5
1,305,964 + SM_b20898 0.23 -0.8
1,306,032 + SM_b20898 0.39 -0.5
1,306,069 - SM_b20898 0.48 -1.5
1,306,078 + SM_b20898 0.51 +0.1
1,306,079 - SM_b20898 0.51 -0.1
1,306,079 - SM_b20898 0.51 +0.0
1,306,079 - SM_b20898 0.51 -0.7
1,306,134 + SM_b20898 0.64 -0.5
1,306,135 - SM_b20898 0.64 +0.1
1,306,135 - SM_b20898 0.64 +0.7
1,306,149 + SM_b20898 0.68 +0.4
1,306,150 - SM_b20898 0.68 +1.6
1,306,150 - SM_b20898 0.68 +0.7
1,306,150 - SM_b20898 0.68 -0.6
1,306,157 - SM_b20898 0.70 +0.1
1,306,168 + SM_b20898 0.73 -0.8
1,306,168 + SM_b20898 0.73 +0.1
1,306,172 + SM_b20898 0.73 +4.2
1,306,172 + SM_b20898 0.73 -0.5
1,306,180 - SM_b20898 0.75 +0.4
1,306,180 - SM_b20898 0.75 -0.9
1,306,180 - SM_b20898 0.75 +0.3
1,306,180 - SM_b20898 0.75 -3.1
1,306,243 + +0.9
1,306,243 + +0.2
1,306,243 + -0.9
1,306,243 + -0.2
1,306,247 + +0.1
1,306,247 + +0.5
1,306,247 + -2.0
1,306,248 - -1.1
1,306,363 + SM_b21678 0.16 -0.7
1,306,364 - SM_b21678 0.16 -0.5
1,306,586 + -0.6
1,306,586 + +1.3
1,306,594 - +1.1
1,306,993 + SM_b20899 0.22 -0.1
1,307,253 - SM_b20899 0.48 -0.1
1,307,397 - SM_b20899 0.63 -0.2
1,307,471 + SM_b20899 0.70 +0.2
1,307,471 + SM_b20899 0.70 -1.0
1,307,471 + SM_b20899 0.70 -0.3
1,307,471 + SM_b20899 0.70 -0.8
1,307,472 - SM_b20899 0.70 +1.3

Or see this region's nucleotide sequence