Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21631 and SM_b21632 are separated by 119 nucleotides SM_b21632 and SM_b21633 are separated by 92 nucleotides SM_b21633 and SM_b21634 are separated by 33 nucleotides
SM_b21631: SM_b21631 - carboxynorspermidine decarboxylase, at 1,659,035 to 1,660,132
_b21631
SM_b21632: SM_b21632 - 3-hydroxyacyl-CoA dehydrogenase, at 1,660,252 to 1,661,568
_b21632
SM_b21633: SM_b21633 - enoyl-CoA hydratase, at 1,661,661 to 1,662,452
_b21633
SM_b21634: SM_b21634 - acyl-CoA thioester hydrolase, at 1,662,486 to 1,662,989
_b21634
Position (kb)
1660
1661
1662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1659.270 kb on + strand, within SM_b21631 at 1659.270 kb on + strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.315 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.382 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.903 kb on + strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.981 kb on + strand, within SM_b21631 at 1659.982 kb on - strand, within SM_b21631 at 1660.113 kb on + strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.153 kb on - strand at 1660.153 kb on - strand at 1660.173 kb on - strand at 1660.616 kb on + strand, within SM_b21632 at 1660.622 kb on + strand, within SM_b21632 at 1660.909 kb on + strand, within SM_b21632 at 1661.087 kb on + strand, within SM_b21632 at 1661.214 kb on + strand, within SM_b21632 at 1661.214 kb on + strand, within SM_b21632 at 1661.215 kb on - strand, within SM_b21632 at 1661.215 kb on - strand, within SM_b21632 at 1661.216 kb on + strand, within SM_b21632 at 1661.216 kb on + strand, within SM_b21632 at 1661.681 kb on - strand at 1661.681 kb on - strand at 1661.926 kb on - strand, within SM_b21633 at 1662.393 kb on + strand at 1662.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,659,270 + SM_b21631 0.21 +0.3 1,659,270 + SM_b21631 0.21 +1.1 1,659,271 - SM_b21631 0.21 -0.3 1,659,271 - SM_b21631 0.21 +0.2 1,659,271 - SM_b21631 0.21 -0.2 1,659,274 + SM_b21631 0.22 -0.8 1,659,274 + SM_b21631 0.22 -0.4 1,659,274 + SM_b21631 0.22 +0.6 1,659,274 + SM_b21631 0.22 -1.2 1,659,274 + SM_b21631 0.22 -1.1 1,659,274 + SM_b21631 0.22 +1.4 1,659,274 + SM_b21631 0.22 -1.4 1,659,275 - SM_b21631 0.22 -0.7 1,659,275 - SM_b21631 0.22 +0.6 1,659,275 - SM_b21631 0.22 +1.4 1,659,275 - SM_b21631 0.22 +0.1 1,659,315 + SM_b21631 0.26 +0.5 1,659,381 + SM_b21631 0.32 +0.6 1,659,381 + SM_b21631 0.32 +0.8 1,659,382 - SM_b21631 0.32 +0.0 1,659,451 - SM_b21631 0.38 -1.9 1,659,451 - SM_b21631 0.38 -0.6 1,659,891 + SM_b21631 0.78 +1.2 1,659,891 + SM_b21631 0.78 +0.0 1,659,901 + SM_b21631 0.79 +0.4 1,659,901 + SM_b21631 0.79 +0.5 1,659,901 + SM_b21631 0.79 +0.2 1,659,901 + SM_b21631 0.79 +2.0 1,659,901 + SM_b21631 0.79 -2.7 1,659,901 + SM_b21631 0.79 -1.6 1,659,901 + SM_b21631 0.79 +1.0 1,659,902 - SM_b21631 0.79 -0.6 1,659,902 - SM_b21631 0.79 -0.8 1,659,903 + SM_b21631 0.79 +0.1 1,659,904 - SM_b21631 0.79 +1.5 1,659,904 - SM_b21631 0.79 +0.5 1,659,979 + SM_b21631 0.86 +0.1 1,659,979 + SM_b21631 0.86 -1.3 1,659,980 - SM_b21631 0.86 -0.3 1,659,980 - SM_b21631 0.86 -0.9 1,659,981 + SM_b21631 0.86 +0.4 1,659,982 - SM_b21631 0.86 +1.9 1,660,113 + -0.4 1,660,114 - +0.8 1,660,114 - +0.5 1,660,114 - -0.1 1,660,153 - -0.7 1,660,153 - -0.3 1,660,173 - -0.2 1,660,616 + SM_b21632 0.28 -0.7 1,660,622 + SM_b21632 0.28 -1.6 1,660,909 + SM_b21632 0.50 -0.5 1,661,087 + SM_b21632 0.63 +0.2 1,661,214 + SM_b21632 0.73 -0.7 1,661,214 + SM_b21632 0.73 -2.4 1,661,215 - SM_b21632 0.73 -0.8 1,661,215 - SM_b21632 0.73 +0.9 1,661,216 + SM_b21632 0.73 +0.8 1,661,216 + SM_b21632 0.73 +0.1 1,661,681 - -0.4 1,661,681 - -1.4 1,661,926 - SM_b21633 0.33 +0.7 1,662,393 + +0.4 1,662,487 + +0.0
Or see this region's nucleotide sequence