Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21508 and SM_b21509 are separated by 173 nucleotides SM_b21509 and SM_b21510 overlap by 269 nucleotides SM_b21510 and SM_b21511 are separated by 13 nucleotides SM_b21511 and SM_b21512 are separated by 59 nucleotides SM_b21512 and SM_b21513 overlap by 4 nucleotides
SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750
_b21508
SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436
_b21509
SM_b21510: SM_b21510 - plasmid stability protein, at 1,435,168 to 1,435,293
_b21510
SM_b21511: SM_b21511 - plasmid stability protein, at 1,435,307 to 1,435,552
_b21511
SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760
_b21512
SM_b21513: SM_b21513 - cell-surface polysaccharide exporter protein PST family, at 1,436,757 to 1,438,067
_b21513
Position (kb)
1435
1436
1437 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1434.792 kb on - strand at 1435.126 kb on + strand, within SM_b21509 at 1435.230 kb on - strand at 1435.265 kb on + strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.266 kb on - strand at 1435.301 kb on + strand, within SM_b21509 at 1435.390 kb on + strand at 1435.391 kb on - strand at 1435.391 kb on - strand at 1435.395 kb on + strand at 1435.396 kb on - strand at 1435.396 kb on - strand at 1435.434 kb on + strand at 1435.526 kb on + strand, within SM_b21511 at 1435.561 kb on + strand at 1435.561 kb on + strand at 1435.562 kb on - strand at 1435.565 kb on + strand at 1435.565 kb on + strand at 1435.566 kb on - strand at 1435.566 kb on - strand at 1435.602 kb on + strand at 1435.602 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.664 kb on + strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.665 kb on - strand at 1435.725 kb on - strand at 1435.764 kb on + strand, within SM_b21512 at 1435.764 kb on + strand, within SM_b21512 at 1435.765 kb on - strand, within SM_b21512 at 1435.808 kb on + strand at 1436.419 kb on - strand, within SM_b21512 at 1436.419 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.498 kb on - strand, within SM_b21512 at 1436.509 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.558 kb on + strand, within SM_b21512 at 1436.559 kb on - strand, within SM_b21512 at 1436.863 kb on + strand at 1436.897 kb on - strand, within SM_b21513 at 1437.036 kb on + strand, within SM_b21513 at 1437.036 kb on + strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.037 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.068 kb on - strand, within SM_b21513 at 1437.165 kb on + strand, within SM_b21513 at 1437.224 kb on + strand, within SM_b21513 at 1437.224 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.253 kb on + strand, within SM_b21513 at 1437.254 kb on - strand, within SM_b21513 at 1437.254 kb on - strand, within SM_b21513 at 1437.286 kb on + strand, within SM_b21513 at 1437.286 kb on + strand, within SM_b21513 at 1437.287 kb on - strand, within SM_b21513 at 1437.369 kb on + strand, within SM_b21513 at 1437.370 kb on - strand, within SM_b21513 at 1437.370 kb on - strand, within SM_b21513 at 1437.379 kb on + strand, within SM_b21513 at 1437.379 kb on + strand, within SM_b21513 at 1437.380 kb on - strand, within SM_b21513 at 1437.380 kb on - strand, within SM_b21513 at 1437.416 kb on - strand, within SM_b21513 at 1437.425 kb on + strand, within SM_b21513 at 1437.449 kb on + strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.450 kb on - strand, within SM_b21513 at 1437.612 kb on - strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.613 kb on + strand, within SM_b21513 at 1437.614 kb on - strand, within SM_b21513 at 1437.614 kb on - strand, within SM_b21513 at 1437.653 kb on + strand, within SM_b21513
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,434,792 - +0.4 1,435,126 + SM_b21509 0.39 +0.1 1,435,230 - +1.0 1,435,265 + -0.4 1,435,266 - -0.4 1,435,266 - -0.6 1,435,266 - +0.4 1,435,301 + SM_b21509 0.73 +0.7 1,435,390 + +1.6 1,435,391 - +0.2 1,435,391 - -0.1 1,435,395 + +1.1 1,435,396 - +0.0 1,435,396 - -0.5 1,435,434 + -0.6 1,435,526 + SM_b21511 0.89 -0.0 1,435,561 + +0.1 1,435,561 + +0.6 1,435,562 - +1.4 1,435,565 + +0.7 1,435,565 + +0.4 1,435,566 - -0.7 1,435,566 - +0.1 1,435,602 + -0.5 1,435,602 + -0.2 1,435,664 + +1.4 1,435,664 + +3.7 1,435,664 + +0.7 1,435,664 + -0.3 1,435,665 - +0.9 1,435,665 - +0.1 1,435,665 - +0.0 1,435,665 - +0.4 1,435,725 - +0.3 1,435,764 + SM_b21512 0.13 +1.5 1,435,764 + SM_b21512 0.13 +0.7 1,435,765 - SM_b21512 0.13 +0.8 1,435,808 + +0.4 1,436,419 - SM_b21512 0.70 +0.7 1,436,419 - SM_b21512 0.70 +0.8 1,436,498 - SM_b21512 0.77 +0.5 1,436,498 - SM_b21512 0.77 +4.6 1,436,509 + SM_b21512 0.78 -0.2 1,436,558 + SM_b21512 0.82 -0.3 1,436,558 + SM_b21512 0.82 +0.7 1,436,558 + SM_b21512 0.82 +1.6 1,436,559 - SM_b21512 0.82 -1.1 1,436,863 + -0.3 1,436,897 - SM_b21513 0.11 +0.6 1,437,036 + SM_b21513 0.21 -0.8 1,437,036 + SM_b21513 0.21 -1.3 1,437,037 - SM_b21513 0.21 +0.7 1,437,037 - SM_b21513 0.21 -1.1 1,437,037 - SM_b21513 0.21 +0.3 1,437,068 - SM_b21513 0.24 +0.2 1,437,068 - SM_b21513 0.24 +0.4 1,437,068 - SM_b21513 0.24 -2.0 1,437,165 + SM_b21513 0.31 -0.2 1,437,224 + SM_b21513 0.36 -0.2 1,437,224 + SM_b21513 0.36 -1.9 1,437,253 + SM_b21513 0.38 -0.8 1,437,253 + SM_b21513 0.38 -0.5 1,437,253 + SM_b21513 0.38 -0.7 1,437,254 - SM_b21513 0.38 +0.7 1,437,254 - SM_b21513 0.38 +0.2 1,437,286 + SM_b21513 0.40 -1.7 1,437,286 + SM_b21513 0.40 +1.4 1,437,287 - SM_b21513 0.40 +2.8 1,437,369 + SM_b21513 0.47 +1.0 1,437,370 - SM_b21513 0.47 -0.3 1,437,370 - SM_b21513 0.47 -0.3 1,437,379 + SM_b21513 0.47 -0.3 1,437,379 + SM_b21513 0.47 +0.3 1,437,380 - SM_b21513 0.48 +0.4 1,437,380 - SM_b21513 0.48 +0.1 1,437,416 - SM_b21513 0.50 -0.0 1,437,425 + SM_b21513 0.51 +0.1 1,437,449 + SM_b21513 0.53 -0.6 1,437,450 - SM_b21513 0.53 -0.3 1,437,450 - SM_b21513 0.53 -1.8 1,437,450 - SM_b21513 0.53 -0.2 1,437,612 - SM_b21513 0.65 +0.4 1,437,613 + SM_b21513 0.65 +0.6 1,437,613 + SM_b21513 0.65 +0.2 1,437,613 + SM_b21513 0.65 +0.3 1,437,614 - SM_b21513 0.65 -2.6 1,437,614 - SM_b21513 0.65 -0.0 1,437,653 + SM_b21513 0.68 +0.9
Or see this region's nucleotide sequence