Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21427 and SM_b21428 are separated by 155 nucleotides SM_b21428 and SM_b21429 are separated by 24 nucleotides SM_b21429 and SM_b21430 overlap by 7 nucleotides
SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114
_b21427
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
SM_b21429: SM_b21429 - iron ABC transporter ATP-binding protein, at 1,359,858 to 1,360,619
_b21429
SM_b21430: SM_b21430 - iron ABC transporter permease, at 1,360,613 to 1,361,683
_b21430
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1358.875 kb on - strand, within SM_b21427 at 1358.905 kb on + strand, within SM_b21427 at 1358.906 kb on - strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.928 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1359.196 kb on + strand at 1359.196 kb on + strand at 1359.197 kb on - strand at 1359.227 kb on + strand at 1359.227 kb on + strand at 1359.228 kb on - strand at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.938 kb on - strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.030 kb on + strand, within SM_b21429 at 1360.228 kb on - strand, within SM_b21429 at 1360.358 kb on - strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.399 kb on + strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.400 kb on - strand, within SM_b21429 at 1360.435 kb on - strand, within SM_b21429 at 1360.440 kb on + strand, within SM_b21429 at 1360.441 kb on - strand, within SM_b21429 at 1360.582 kb on + strand at 1360.583 kb on - strand at 1360.614 kb on + strand at 1360.807 kb on + strand, within SM_b21430 at 1360.807 kb on + strand, within SM_b21430 at 1360.808 kb on - strand, within SM_b21430 at 1360.816 kb on + strand, within SM_b21430 at 1360.946 kb on - strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.263 kb on + strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.264 kb on - strand, within SM_b21430 at 1361.266 kb on - strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.453 kb on + strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.454 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430 at 1361.533 kb on - strand, within SM_b21430
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,358,875 - SM_b21427 0.51 +0.6 1,358,905 + SM_b21427 0.57 +0.1 1,358,906 - SM_b21427 0.57 -0.2 1,358,927 + SM_b21427 0.62 +1.6 1,358,927 + SM_b21427 0.62 -0.0 1,358,927 + SM_b21427 0.62 +0.4 1,358,928 - SM_b21427 0.62 +0.7 1,358,952 - SM_b21427 0.67 -0.0 1,358,952 - SM_b21427 0.67 +0.2 1,358,952 - SM_b21427 0.67 +0.9 1,359,196 + +0.2 1,359,196 + +1.1 1,359,197 - -0.9 1,359,227 + -1.8 1,359,227 + +0.6 1,359,228 - +0.7 1,359,585 + SM_b21428 0.56 +0.2 1,359,585 + SM_b21428 0.56 +0.5 1,359,585 + SM_b21428 0.56 +1.5 1,359,585 + SM_b21428 0.56 +0.9 1,359,585 + SM_b21428 0.56 -0.1 1,359,586 - SM_b21428 0.56 +0.2 1,359,586 - SM_b21428 0.56 +0.7 1,359,586 - SM_b21428 0.56 +0.4 1,359,586 - SM_b21428 0.56 +2.4 1,359,938 - SM_b21429 0.10 -0.7 1,360,030 + SM_b21429 0.23 +0.5 1,360,030 + SM_b21429 0.23 -0.0 1,360,228 - SM_b21429 0.49 +0.5 1,360,358 - SM_b21429 0.66 +1.1 1,360,399 + SM_b21429 0.71 +1.1 1,360,399 + SM_b21429 0.71 +0.2 1,360,399 + SM_b21429 0.71 +0.6 1,360,400 - SM_b21429 0.71 +0.4 1,360,400 - SM_b21429 0.71 +1.3 1,360,400 - SM_b21429 0.71 -0.2 1,360,435 - SM_b21429 0.76 -3.2 1,360,440 + SM_b21429 0.76 +1.2 1,360,441 - SM_b21429 0.77 +1.3 1,360,582 + +0.1 1,360,583 - +0.7 1,360,614 + +1.6 1,360,807 + SM_b21430 0.18 +0.2 1,360,807 + SM_b21430 0.18 +0.0 1,360,808 - SM_b21430 0.18 +1.6 1,360,816 + SM_b21430 0.19 -0.8 1,360,946 - SM_b21430 0.31 -0.6 1,361,263 + SM_b21430 0.61 +0.4 1,361,263 + SM_b21430 0.61 +1.8 1,361,263 + SM_b21430 0.61 +0.3 1,361,263 + SM_b21430 0.61 -2.6 1,361,264 - SM_b21430 0.61 -0.1 1,361,264 - SM_b21430 0.61 +0.3 1,361,264 - SM_b21430 0.61 +1.0 1,361,266 - SM_b21430 0.61 +2.2 1,361,453 + SM_b21430 0.78 -2.1 1,361,453 + SM_b21430 0.78 -1.0 1,361,453 + SM_b21430 0.78 -2.9 1,361,453 + SM_b21430 0.78 +0.2 1,361,453 + SM_b21430 0.78 +0.6 1,361,454 - SM_b21430 0.79 +1.1 1,361,454 - SM_b21430 0.79 -0.2 1,361,533 - SM_b21430 0.86 +0.1 1,361,533 - SM_b21430 0.86 +0.8
Or see this region's nucleotide sequence