Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21372 and SM_b21373 are separated by 111 nucleotides SM_b21373 and SM_b21374 are separated by 2 nucleotides SM_b21374 and SM_b21375 are separated by 23 nucleotides
SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604
_b21372
SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data) , at 1,037,716 to 1,038,996
_b21373
SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data) , at 1,038,999 to 1,039,940
_b21374
SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926
_b21375
Position (kb)
1037
1038
1039 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1036.716 kb on - strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.983 kb on - strand, within SM_b21372 at 1037.033 kb on + strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.142 kb on - strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.452 kb on + strand, within SM_b21372 at 1037.453 kb on - strand, within SM_b21372 at 1037.510 kb on + strand at 1037.511 kb on - strand at 1037.819 kb on + strand at 1037.928 kb on - strand, within SM_b21373 at 1037.944 kb on - strand, within SM_b21373 at 1037.945 kb on + strand, within SM_b21373 at 1037.993 kb on + strand, within SM_b21373 at 1037.994 kb on - strand, within SM_b21373 at 1038.278 kb on + strand at 1038.279 kb on - strand, within SM_b21373 at 1038.436 kb on + strand at 1038.437 kb on - strand, within SM_b21373 at 1038.437 kb on - strand, within SM_b21373 at 1038.644 kb on + strand, within SM_b21373 at 1038.645 kb on - strand, within SM_b21373 at 1038.816 kb on - strand, within SM_b21373 at 1039.392 kb on - strand, within SM_b21374 at 1039.392 kb on - strand, within SM_b21374 at 1039.410 kb on - strand, within SM_b21374 at 1039.929 kb on + strand at 1039.930 kb on - strand at 1039.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,036,716 - SM_b21372 0.16 -1.6 1,036,925 + SM_b21372 0.36 -1.8 1,036,925 + SM_b21372 0.36 +0.3 1,036,925 + SM_b21372 0.36 -0.8 1,036,925 + SM_b21372 0.36 -1.5 1,036,926 - SM_b21372 0.36 +2.3 1,036,926 - SM_b21372 0.36 -0.7 1,036,926 - SM_b21372 0.36 +0.7 1,036,982 + SM_b21372 0.41 -0.0 1,036,982 + SM_b21372 0.41 +0.9 1,036,982 + SM_b21372 0.41 -0.7 1,036,982 + SM_b21372 0.41 +3.6 1,036,983 - SM_b21372 0.41 -0.4 1,037,033 + SM_b21372 0.46 +2.8 1,037,034 - SM_b21372 0.46 -0.3 1,037,034 - SM_b21372 0.46 +2.2 1,037,034 - SM_b21372 0.46 +0.5 1,037,141 + SM_b21372 0.56 +1.0 1,037,141 + SM_b21372 0.56 +0.8 1,037,141 + SM_b21372 0.56 +1.6 1,037,142 - SM_b21372 0.56 -1.6 1,037,351 + SM_b21372 0.76 +0.6 1,037,351 + SM_b21372 0.76 +0.1 1,037,351 + SM_b21372 0.76 +0.3 1,037,351 + SM_b21372 0.76 +1.5 1,037,351 + SM_b21372 0.76 -1.1 1,037,351 + SM_b21372 0.76 +0.9 1,037,352 - SM_b21372 0.76 +0.3 1,037,352 - SM_b21372 0.76 -0.0 1,037,352 - SM_b21372 0.76 +1.2 1,037,452 + SM_b21372 0.86 -0.8 1,037,453 - SM_b21372 0.86 -0.2 1,037,510 + +0.1 1,037,511 - +1.4 1,037,819 + -0.7 1,037,928 - SM_b21373 0.17 -1.8 1,037,944 - SM_b21373 0.18 +1.5 1,037,945 + SM_b21373 0.18 -1.8 1,037,993 + SM_b21373 0.22 -1.4 1,037,994 - SM_b21373 0.22 -1.3 1,038,278 + -1.0 1,038,279 - SM_b21373 0.44 +1.7 1,038,436 + -1.3 1,038,437 - SM_b21373 0.56 -1.0 1,038,437 - SM_b21373 0.56 -0.5 1,038,644 + SM_b21373 0.72 -1.8 1,038,645 - SM_b21373 0.73 -0.7 1,038,816 - SM_b21373 0.86 +0.0 1,039,392 - SM_b21374 0.42 +1.3 1,039,392 - SM_b21374 0.42 +0.6 1,039,410 - SM_b21374 0.44 -0.0 1,039,929 + +1.7 1,039,930 - +0.6 1,039,930 - +0.5
Or see this region's nucleotide sequence