Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21340 and SM_b21341 are separated by 29 nucleotides SM_b21341 and SM_b21342 are separated by 53 nucleotides
SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831
_b21340
SM_b21341: SM_b21341 - hypothetical protein, at 1,006,861 to 1,007,709
_b21341
SM_b21342: SM_b21342 - sugar uptake ABC transporter permease, at 1,007,763 to 1,008,761
_b21342
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.291 kb on + strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.474 kb on + strand, within SM_b21340 at 1006.475 kb on - strand, within SM_b21340 at 1006.572 kb on - strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.748 kb on + strand at 1006.982 kb on + strand, within SM_b21341 at 1006.982 kb on + strand, within SM_b21341 at 1007.256 kb on + strand, within SM_b21341 at 1007.361 kb on - strand, within SM_b21341 at 1007.409 kb on - strand, within SM_b21341 at 1007.857 kb on + strand at 1007.978 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.991 kb on + strand, within SM_b21342 at 1007.992 kb on - strand, within SM_b21342 at 1008.103 kb on + strand, within SM_b21342 at 1008.227 kb on - strand, within SM_b21342 at 1008.304 kb on + strand, within SM_b21342 at 1008.305 kb on - strand, within SM_b21342 at 1008.353 kb on - strand, within SM_b21342 at 1008.481 kb on + strand, within SM_b21342 at 1008.604 kb on + strand, within SM_b21342 at 1008.605 kb on - strand, within SM_b21342 at 1008.629 kb on - strand, within SM_b21342
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,006,002 - SM_b21340 0.22 +1.3 1,006,002 - SM_b21340 0.22 -2.6 1,006,002 - SM_b21340 0.22 +1.4 1,006,002 - SM_b21340 0.22 -1.6 1,006,002 - SM_b21340 0.22 +0.2 1,006,291 + SM_b21340 0.49 -1.7 1,006,362 - SM_b21340 0.56 -2.1 1,006,362 - SM_b21340 0.56 +0.3 1,006,474 + SM_b21340 0.66 -0.2 1,006,475 - SM_b21340 0.67 -0.9 1,006,572 - SM_b21340 0.76 -0.0 1,006,621 + SM_b21340 0.80 -0.5 1,006,621 + SM_b21340 0.80 +1.5 1,006,622 - SM_b21340 0.80 +0.4 1,006,622 - SM_b21340 0.80 -1.0 1,006,748 + +0.4 1,006,982 + SM_b21341 0.14 -0.7 1,006,982 + SM_b21341 0.14 +0.3 1,007,256 + SM_b21341 0.47 +0.7 1,007,361 - SM_b21341 0.59 +0.8 1,007,409 - SM_b21341 0.65 +2.6 1,007,857 + +0.4 1,007,978 + SM_b21342 0.22 -0.1 1,007,991 + SM_b21342 0.23 +0.2 1,007,991 + SM_b21342 0.23 -0.3 1,007,991 + SM_b21342 0.23 -1.0 1,007,992 - SM_b21342 0.23 +1.1 1,008,103 + SM_b21342 0.34 -0.4 1,008,227 - SM_b21342 0.46 -0.5 1,008,304 + SM_b21342 0.54 +0.3 1,008,305 - SM_b21342 0.54 -0.7 1,008,353 - SM_b21342 0.59 +0.2 1,008,481 + SM_b21342 0.72 -0.0 1,008,604 + SM_b21342 0.84 +1.9 1,008,605 - SM_b21342 0.84 +0.2 1,008,629 - SM_b21342 0.87 -0.7
Or see this region's nucleotide sequence