Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21284 and SM_b21285 are separated by 167 nucleotides SM_b21285 and SM_b21286 are separated by 5 nucleotides
SM_b21284: SM_b21284 - uricase, at 858,904 to 860,319
_b21284
SM_b21285: SM_b21285 - transthyretin-like protein, at 860,487 to 860,858
_b21285
SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345
_b21286
Position (kb)
860
861 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 859.499 kb on + strand, within SM_b21284 at 859.499 kb on + strand, within SM_b21284 at 859.500 kb on - strand, within SM_b21284 at 859.632 kb on - strand, within SM_b21284 at 859.632 kb on - strand, within SM_b21284 at 859.703 kb on + strand, within SM_b21284 at 859.703 kb on + strand, within SM_b21284 at 859.764 kb on - strand, within SM_b21284 at 859.779 kb on - strand, within SM_b21284 at 859.838 kb on + strand, within SM_b21284 at 859.839 kb on - strand, within SM_b21284 at 860.045 kb on - strand, within SM_b21284 at 860.105 kb on + strand, within SM_b21284 at 860.226 kb on - strand at 860.274 kb on + strand at 860.319 kb on + strand at 860.320 kb on - strand at 860.320 kb on - strand at 860.360 kb on + strand at 860.688 kb on + strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.689 kb on - strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.802 kb on + strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.803 kb on - strand, within SM_b21285 at 860.829 kb on + strand at 860.835 kb on + strand at 860.836 kb on - strand at 860.844 kb on + strand at 860.845 kb on - strand at 860.845 kb on - strand at 861.240 kb on - strand, within SM_b21286 at 861.324 kb on - strand, within SM_b21286 at 861.681 kb on - strand, within SM_b21286 at 861.787 kb on + strand, within SM_b21286
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 859,499 + SM_b21284 0.42 +1.9 859,499 + SM_b21284 0.42 -0.8 859,500 - SM_b21284 0.42 +0.4 859,632 - SM_b21284 0.51 +0.8 859,632 - SM_b21284 0.51 -1.7 859,703 + SM_b21284 0.56 -0.1 859,703 + SM_b21284 0.56 -0.1 859,764 - SM_b21284 0.61 +0.4 859,779 - SM_b21284 0.62 +0.3 859,838 + SM_b21284 0.66 -0.4 859,839 - SM_b21284 0.66 -0.4 860,045 - SM_b21284 0.81 -0.2 860,105 + SM_b21284 0.85 -1.0 860,226 - +1.9 860,274 + -0.6 860,319 + +1.3 860,320 - -0.2 860,320 - -0.1 860,360 + -0.1 860,688 + SM_b21285 0.54 -0.0 860,689 - SM_b21285 0.54 +1.0 860,689 - SM_b21285 0.54 -1.0 860,689 - SM_b21285 0.54 -1.4 860,802 + SM_b21285 0.85 -0.7 860,802 + SM_b21285 0.85 +0.3 860,802 + SM_b21285 0.85 -2.2 860,803 - SM_b21285 0.85 -0.5 860,803 - SM_b21285 0.85 -0.9 860,829 + +0.7 860,835 + -2.0 860,836 - -1.3 860,844 + -1.0 860,845 - +0.4 860,845 - +1.1 861,240 - SM_b21286 0.25 +0.4 861,324 - SM_b21286 0.31 +1.1 861,681 - SM_b21286 0.55 -1.4 861,787 + SM_b21286 0.62 -0.7
Or see this region's nucleotide sequence