Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21252 and SM_b21253 overlap by 4 nucleotides SM_b21253 and SM_b21254 overlap by 14 nucleotides
SM_b21252: SM_b21252 - glycosyltransferase, at 822,580 to 823,677
_b21252
SM_b21253: SM_b21253 - hypothetical protein, at 823,674 to 824,444
_b21253
SM_b21254: SM_b21254 - hypothetical protein, at 824,431 to 825,261
_b21254
Position (kb) 823
824
825 Strain fitness (log2 ratio) -1
0
1 at 822.844 kb on + strand, within SM_b21252 at 822.844 kb on + strand, within SM_b21252 at 822.844 kb on + strand, within SM_b21252 at 822.845 kb on - strand, within SM_b21252 at 822.847 kb on + strand, within SM_b21252 at 822.847 kb on + strand, within SM_b21252 at 822.847 kb on + strand, within SM_b21252 at 822.848 kb on - strand, within SM_b21252 at 822.848 kb on - strand, within SM_b21252 at 822.901 kb on + strand, within SM_b21252 at 822.901 kb on + strand, within SM_b21252 at 822.901 kb on + strand, within SM_b21252 at 822.902 kb on - strand, within SM_b21252 at 822.902 kb on - strand, within SM_b21252 at 822.923 kb on - strand, within SM_b21252 at 822.923 kb on - strand, within SM_b21252 at 823.158 kb on + strand, within SM_b21252 at 823.176 kb on + strand, within SM_b21252 at 823.180 kb on + strand, within SM_b21252 at 823.180 kb on + strand, within SM_b21252 at 823.181 kb on - strand, within SM_b21252 at 823.181 kb on - strand, within SM_b21252 at 823.181 kb on - strand, within SM_b21252 at 823.181 kb on - strand, within SM_b21252 at 823.367 kb on - strand, within SM_b21252 at 823.394 kb on - strand, within SM_b21252 at 823.400 kb on + strand, within SM_b21252 at 823.400 kb on + strand, within SM_b21252 at 823.400 kb on + strand, within SM_b21252 at 823.405 kb on + strand, within SM_b21252 at 823.405 kb on + strand, within SM_b21252 at 823.405 kb on + strand, within SM_b21252 at 823.405 kb on + strand, within SM_b21252 at 823.406 kb on - strand, within SM_b21252 at 823.406 kb on - strand, within SM_b21252 at 823.406 kb on - strand, within SM_b21252 at 823.406 kb on - strand, within SM_b21252 at 823.406 kb on - strand, within SM_b21252 at 823.562 kb on + strand, within SM_b21252 at 823.562 kb on + strand, within SM_b21252 at 823.563 kb on - strand, within SM_b21252 at 823.563 kb on - strand, within SM_b21252 at 823.850 kb on - strand, within SM_b21253 at 824.040 kb on + strand, within SM_b21253 at 824.051 kb on + strand, within SM_b21253 at 824.127 kb on - strand, within SM_b21253 at 824.253 kb on + strand, within SM_b21253 at 824.254 kb on - strand, within SM_b21253 at 824.432 kb on + strand at 824.433 kb on - strand at 825.276 kb on - strand at 825.393 kb on - strand at 825.415 kb on + strand at 825.415 kb on + strand at 825.415 kb on + strand at 825.416 kb on - strand at 825.416 kb on - strand at 825.416 kb on - strand at 825.424 kb on + strand at 825.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 822,844 + SM_b21252 0.24 +0.2 822,844 + SM_b21252 0.24 +0.2 822,844 + SM_b21252 0.24 +0.7 822,845 - SM_b21252 0.24 +0.4 822,847 + SM_b21252 0.24 +0.7 822,847 + SM_b21252 0.24 +1.4 822,847 + SM_b21252 0.24 -0.5 822,848 - SM_b21252 0.24 +1.0 822,848 - SM_b21252 0.24 +0.8 822,901 + SM_b21252 0.29 -0.2 822,901 + SM_b21252 0.29 +1.3 822,901 + SM_b21252 0.29 +1.5 822,902 - SM_b21252 0.29 +0.6 822,902 - SM_b21252 0.29 +0.8 822,923 - SM_b21252 0.31 -0.5 822,923 - SM_b21252 0.31 -0.6 823,158 + SM_b21252 0.53 +0.2 823,176 + SM_b21252 0.54 +0.9 823,180 + SM_b21252 0.55 +0.4 823,180 + SM_b21252 0.55 -0.1 823,181 - SM_b21252 0.55 -1.7 823,181 - SM_b21252 0.55 +1.0 823,181 - SM_b21252 0.55 +1.5 823,181 - SM_b21252 0.55 +1.0 823,367 - SM_b21252 0.72 +1.5 823,394 - SM_b21252 0.74 -0.2 823,400 + SM_b21252 0.75 +0.3 823,400 + SM_b21252 0.75 +0.0 823,400 + SM_b21252 0.75 +0.1 823,405 + SM_b21252 0.75 +0.6 823,405 + SM_b21252 0.75 +1.6 823,405 + SM_b21252 0.75 +0.5 823,405 + SM_b21252 0.75 +0.9 823,406 - SM_b21252 0.75 -0.6 823,406 - SM_b21252 0.75 +0.2 823,406 - SM_b21252 0.75 +0.8 823,406 - SM_b21252 0.75 -1.1 823,406 - SM_b21252 0.75 +0.6 823,562 + SM_b21252 0.89 +1.5 823,562 + SM_b21252 0.89 +0.2 823,563 - SM_b21252 0.90 +0.3 823,563 - SM_b21252 0.90 +0.3 823,850 - SM_b21253 0.23 +0.3 824,040 + SM_b21253 0.47 +0.5 824,051 + SM_b21253 0.49 +0.9 824,127 - SM_b21253 0.59 +1.7 824,253 + SM_b21253 0.75 +0.5 824,254 - SM_b21253 0.75 +1.6 824,432 + -1.0 824,433 - -0.2 825,276 - +0.2 825,393 - -0.0 825,415 + +0.6 825,415 + +1.6 825,415 + +1.1 825,416 - +0.2 825,416 - -0.3 825,416 - -0.5 825,424 + -0.7 825,425 - -0.1
Or see this region's nucleotide sequence