Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21179 and SM_b21180 are separated by 30 nucleotides SM_b21180 and SM_b21181 are separated by 187 nucleotides
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
Position (kb) 926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179 at 926.603 kb on + strand, within SM_b21179 at 926.604 kb on - strand, within SM_b21179 at 926.702 kb on + strand at 926.751 kb on - strand at 926.751 kb on - strand at 926.762 kb on + strand at 926.763 kb on - strand at 926.763 kb on - strand at 926.791 kb on + strand at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 925,908 - SM_b21179 0.23 -0.2 926,062 + SM_b21179 0.36 +1.3 926,062 + SM_b21179 0.36 -0.7 926,367 - SM_b21179 0.62 +0.3 926,516 - SM_b21179 0.75 -2.1 926,603 + SM_b21179 0.82 -0.2 926,604 - SM_b21179 0.83 -0.1 926,702 + +0.4 926,751 - -0.0 926,751 - +1.1 926,762 + +0.5 926,763 - +0.1 926,763 - +0.9 926,791 + -0.2 927,188 + SM_b21180 0.37 -0.5 927,188 + SM_b21180 0.37 -0.0 927,189 - SM_b21180 0.37 -0.7 927,257 + SM_b21180 0.44 +0.6 927,257 + SM_b21180 0.44 +1.9 927,308 - SM_b21180 0.49 -0.1 927,815 + -1.2 927,816 - -1.0 927,820 + +0.8 927,821 - -0.5 927,827 - -1.6 927,975 + +0.4 927,975 + +0.9 927,976 - -1.4 927,976 - +1.2 927,976 - +2.3 928,077 - -0.7 928,077 - -0.1 928,196 + SM_b21181 0.18 +0.5 928,196 + SM_b21181 0.18 -0.3 928,196 + SM_b21181 0.18 +0.4 928,197 - SM_b21181 0.18 -0.2 928,217 + SM_b21181 0.20 -2.7 928,217 + SM_b21181 0.20 +0.8 928,217 + SM_b21181 0.20 +0.8 928,227 - SM_b21181 0.21 +0.6 928,307 + SM_b21181 0.28 +1.0 928,349 + SM_b21181 0.31 +0.9 928,515 + SM_b21181 0.45 -1.0 928,516 - SM_b21181 0.45 -0.9 928,516 - SM_b21181 0.45 +0.1 928,516 - SM_b21181 0.45 -0.9 928,653 + SM_b21181 0.57 +0.6
Or see this region's nucleotide sequence