Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21161 and SM_b21162 are separated by 73 nucleotides SM_b21162 and SM_b21163 are separated by 197 nucleotides
SM_b21161: SM_b21161 - hypothetical protein, at 905,250 to 906,683
_b21161
SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971
_b21162
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 908,169 to 909,842
_b21163
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 905.854 kb on - strand, within SM_b21161 at 905.854 kb on - strand, within SM_b21161 at 905.916 kb on + strand, within SM_b21161 at 906.109 kb on + strand, within SM_b21161 at 906.401 kb on - strand, within SM_b21161 at 906.401 kb on - strand, within SM_b21161 at 906.433 kb on - strand, within SM_b21161 at 906.437 kb on + strand, within SM_b21161 at 906.437 kb on + strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.438 kb on - strand, within SM_b21161 at 906.507 kb on + strand, within SM_b21161 at 906.690 kb on - strand at 906.988 kb on + strand, within SM_b21162 at 907.046 kb on - strand, within SM_b21162 at 907.133 kb on - strand, within SM_b21162 at 907.403 kb on + strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.404 kb on - strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.406 kb on + strand, within SM_b21162 at 907.543 kb on - strand, within SM_b21162 at 907.608 kb on + strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.609 kb on - strand, within SM_b21162 at 907.638 kb on - strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.639 kb on + strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.640 kb on - strand, within SM_b21162 at 907.691 kb on - strand, within SM_b21162 at 907.750 kb on + strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.751 kb on - strand, within SM_b21162 at 907.889 kb on + strand at 907.890 kb on - strand at 908.164 kb on + strand at 908.164 kb on + strand at 908.165 kb on - strand at 908.165 kb on - strand at 908.221 kb on - strand at 908.316 kb on - strand at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.396 kb on + strand, within SM_b21163 at 908.726 kb on - strand, within SM_b21163 at 908.798 kb on + strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.801 kb on - strand, within SM_b21163 at 908.878 kb on + strand, within SM_b21163
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 905,854 - SM_b21161 0.42 +0.6 905,854 - SM_b21161 0.42 -1.0 905,916 + SM_b21161 0.46 -0.5 906,109 + SM_b21161 0.60 -3.1 906,401 - SM_b21161 0.80 -1.2 906,401 - SM_b21161 0.80 -0.2 906,433 - SM_b21161 0.82 +0.7 906,437 + SM_b21161 0.83 -0.0 906,437 + SM_b21161 0.83 -0.8 906,438 - SM_b21161 0.83 +0.0 906,438 - SM_b21161 0.83 -0.5 906,438 - SM_b21161 0.83 +0.1 906,438 - SM_b21161 0.83 -1.3 906,507 + SM_b21161 0.88 +0.1 906,690 - +2.4 906,988 + SM_b21162 0.19 -1.1 907,046 - SM_b21162 0.24 -1.1 907,133 - SM_b21162 0.31 +0.2 907,403 + SM_b21162 0.53 -2.0 907,404 - SM_b21162 0.53 +0.7 907,404 - SM_b21162 0.53 -0.9 907,406 + SM_b21162 0.53 -1.3 907,406 + SM_b21162 0.53 +0.3 907,543 - SM_b21162 0.65 -1.8 907,608 + SM_b21162 0.70 -1.2 907,609 - SM_b21162 0.70 -0.4 907,609 - SM_b21162 0.70 +0.0 907,638 - SM_b21162 0.73 -0.8 907,639 + SM_b21162 0.73 -0.1 907,639 + SM_b21162 0.73 +0.9 907,640 - SM_b21162 0.73 -0.3 907,640 - SM_b21162 0.73 -1.0 907,640 - SM_b21162 0.73 +0.4 907,640 - SM_b21162 0.73 -0.4 907,691 - SM_b21162 0.77 -0.6 907,750 + SM_b21162 0.82 -0.6 907,751 - SM_b21162 0.82 +0.3 907,751 - SM_b21162 0.82 +1.7 907,889 + -0.4 907,890 - -1.5 908,164 + +0.5 908,164 + -0.8 908,165 - +0.7 908,165 - -1.4 908,221 - -0.7 908,316 - +0.2 908,396 + SM_b21163 0.14 +0.1 908,396 + SM_b21163 0.14 -0.0 908,396 + SM_b21163 0.14 +0.2 908,726 - SM_b21163 0.33 +1.0 908,798 + SM_b21163 0.38 +1.2 908,801 - SM_b21163 0.38 -0.3 908,801 - SM_b21163 0.38 +1.0 908,878 + SM_b21163 0.42 -0.1
Or see this region's nucleotide sequence