Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21151 and SM_b21152 are separated by 88 nucleotides SM_b21152 and SM_b21153 are separated by 2 nucleotides SM_b21153 and SM_b21154 are separated by 150 nucleotides
SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784
_b21151
SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006
_b21152
SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509
_b21153
SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043
_b21154
Position (kb) 896
897
898
899 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 895.906 kb on + strand, within SM_b21151 at 895.907 kb on - strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.914 kb on + strand, within SM_b21151 at 895.960 kb on - strand, within SM_b21151 at 895.985 kb on - strand, within SM_b21151 at 896.158 kb on + strand, within SM_b21151 at 896.160 kb on + strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.161 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.194 kb on - strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.236 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.278 kb on + strand, within SM_b21151 at 896.388 kb on - strand, within SM_b21151 at 896.625 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.636 kb on + strand, within SM_b21151 at 896.641 kb on + strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.642 kb on - strand, within SM_b21151 at 896.776 kb on + strand at 896.777 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.783 kb on - strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.830 kb on + strand at 896.872 kb on - strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.918 kb on + strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 896.919 kb on - strand at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.122 kb on + strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.123 kb on - strand, within SM_b21152 at 897.131 kb on + strand, within SM_b21152 at 897.139 kb on + strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.232 kb on - strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.437 kb on + strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.537 kb on - strand, within SM_b21152 at 897.553 kb on + strand, within SM_b21152 at 897.554 kb on - strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.555 kb on + strand, within SM_b21152 at 897.556 kb on - strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.644 kb on + strand, within SM_b21152 at 897.706 kb on - strand, within SM_b21152 at 897.777 kb on + strand, within SM_b21152 at 897.809 kb on + strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.810 kb on - strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.839 kb on + strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 897.840 kb on - strand, within SM_b21152 at 898.004 kb on + strand at 898.005 kb on - strand at 898.270 kb on + strand, within SM_b21153 at 898.271 kb on - strand, within SM_b21153 at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.687 kb on + strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand at 898.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 895,906 + SM_b21151 0.29 +0.1 895,907 - SM_b21151 0.29 -1.3 895,914 + SM_b21151 0.29 -2.3 895,914 + SM_b21151 0.29 -0.8 895,960 - SM_b21151 0.33 +0.0 895,985 - SM_b21151 0.35 -2.3 896,158 + SM_b21151 0.49 +0.2 896,160 + SM_b21151 0.49 -0.2 896,161 - SM_b21151 0.49 +0.4 896,161 - SM_b21151 0.49 +0.7 896,194 - SM_b21151 0.52 -2.2 896,194 - SM_b21151 0.52 -1.1 896,194 - SM_b21151 0.52 +0.4 896,194 - SM_b21151 0.52 -1.5 896,236 + SM_b21151 0.55 +0.1 896,236 + SM_b21151 0.55 -1.8 896,236 + SM_b21151 0.55 +2.3 896,278 + SM_b21151 0.59 +0.4 896,278 + SM_b21151 0.59 -0.1 896,388 - SM_b21151 0.68 +0.1 896,625 + SM_b21151 0.87 +0.8 896,636 + SM_b21151 0.88 -0.1 896,636 + SM_b21151 0.88 -0.5 896,641 + SM_b21151 0.88 -0.3 896,642 - SM_b21151 0.88 -0.2 896,642 - SM_b21151 0.88 +0.1 896,776 + -1.0 896,777 - -1.1 896,783 - +0.8 896,783 - -1.9 896,783 - -0.2 896,783 - +0.0 896,783 - +0.7 896,783 - -0.4 896,830 + +0.0 896,830 + -0.9 896,830 + -2.4 896,830 + -0.0 896,872 - -2.3 896,918 + +0.1 896,918 + -0.6 896,918 + -1.3 896,919 - -0.2 896,919 - -0.4 896,919 - -0.3 896,919 - +0.0 897,122 + SM_b21152 0.22 -1.3 897,122 + SM_b21152 0.22 +0.1 897,122 + SM_b21152 0.22 +3.1 897,123 - SM_b21152 0.22 +0.9 897,123 - SM_b21152 0.22 -1.5 897,123 - SM_b21152 0.22 -0.8 897,131 + SM_b21152 0.23 -0.5 897,139 + SM_b21152 0.23 -1.3 897,232 - SM_b21152 0.32 +1.3 897,232 - SM_b21152 0.32 -0.3 897,437 + SM_b21152 0.50 +0.5 897,437 + SM_b21152 0.50 -2.5 897,537 - SM_b21152 0.59 +0.2 897,537 - SM_b21152 0.59 +0.6 897,553 + SM_b21152 0.60 -0.2 897,554 - SM_b21152 0.60 -0.1 897,555 + SM_b21152 0.60 +0.6 897,555 + SM_b21152 0.60 -0.2 897,555 + SM_b21152 0.60 -0.7 897,556 - SM_b21152 0.60 +0.2 897,644 + SM_b21152 0.68 -0.6 897,644 + SM_b21152 0.68 -0.4 897,644 + SM_b21152 0.68 -0.4 897,706 - SM_b21152 0.73 -0.5 897,777 + SM_b21152 0.80 +0.4 897,809 + SM_b21152 0.83 +0.1 897,810 - SM_b21152 0.83 -1.9 897,810 - SM_b21152 0.83 -1.4 897,839 + SM_b21152 0.85 -0.1 897,839 + SM_b21152 0.85 -2.2 897,840 - SM_b21152 0.85 -0.9 897,840 - SM_b21152 0.85 -0.8 898,004 + +0.1 898,005 - -0.2 898,270 + SM_b21153 0.52 -0.3 898,271 - SM_b21153 0.52 +0.9 898,687 + -0.3 898,687 + +1.2 898,687 + +0.6 898,687 + -1.4 898,687 + -0.0 898,688 - +0.9 898,688 - -0.2 898,688 - +0.7 898,688 - +0.3 898,688 - -1.1 898,688 - -1.6
Or see this region's nucleotide sequence