Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21104 and SM_b21105 overlap by 1 nucleotides SM_b21105 and SM_b21106 are separated by 6 nucleotides SM_b21106 and SM_b21107 are separated by 1 nucleotides
SM_b21104: SM_b21104 - ABC transporter for L-Fucose, permease component 1 (from data) , at 746,362 to 747,258
_b21104
SM_b21105: SM_b21105 - ABC transporter for L-Fucose, permease component 2 (from data) , at 747,258 to 748,124
_b21105
SM_b21106: SM_b21106 - ABC transporter for L-Fucose, ATPase component (from data) , at 748,131 to 749,228
_b21106
SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data) , at 749,230 to 750,342
_b21107
Position (kb)
748
749
750 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 747.131 kb on - strand, within SM_b21104 at 747.170 kb on - strand at 747.170 kb on - strand at 747.205 kb on + strand at 747.256 kb on + strand at 747.256 kb on + strand at 747.263 kb on + strand at 747.263 kb on + strand at 747.521 kb on - strand, within SM_b21105 at 747.678 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.726 kb on + strand, within SM_b21105 at 747.727 kb on - strand, within SM_b21105 at 747.727 kb on - strand, within SM_b21105 at 747.922 kb on - strand, within SM_b21105 at 747.942 kb on - strand, within SM_b21105 at 747.987 kb on + strand, within SM_b21105 at 748.142 kb on + strand at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.380 kb on + strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.381 kb on - strand, within SM_b21106 at 748.397 kb on + strand, within SM_b21106 at 748.397 kb on + strand, within SM_b21106 at 748.398 kb on - strand, within SM_b21106 at 748.398 kb on - strand, within SM_b21106 at 748.415 kb on + strand, within SM_b21106 at 748.613 kb on - strand, within SM_b21106 at 748.613 kb on - strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.695 kb on + strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.696 kb on - strand, within SM_b21106 at 748.983 kb on + strand, within SM_b21106 at 748.983 kb on + strand, within SM_b21106 at 748.984 kb on - strand, within SM_b21106 at 748.984 kb on - strand, within SM_b21106 at 749.235 kb on + strand at 749.372 kb on - strand, within SM_b21107 at 749.636 kb on - strand, within SM_b21107 at 749.636 kb on - strand, within SM_b21107 at 749.761 kb on + strand, within SM_b21107 at 749.761 kb on + strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.983 kb on + strand, within SM_b21107 at 750.007 kb on + strand, within SM_b21107 at 750.008 kb on - strand at 750.008 kb on - strand, within SM_b21107 at 750.008 kb on - strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.010 kb on - strand, within SM_b21107 at 750.178 kb on + strand, within SM_b21107 at 750.179 kb on - strand, within SM_b21107 at 750.188 kb on - strand, within SM_b21107
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 747,131 - SM_b21104 0.86 +0.1 747,170 - -1.1 747,170 - +0.5 747,205 + -0.9 747,256 + +0.6 747,256 + +0.0 747,263 + +0.6 747,263 + -0.0 747,521 - SM_b21105 0.30 +0.2 747,678 + SM_b21105 0.48 -1.2 747,726 + SM_b21105 0.54 -0.2 747,726 + SM_b21105 0.54 -0.0 747,726 + SM_b21105 0.54 -0.9 747,726 + SM_b21105 0.54 +0.1 747,726 + SM_b21105 0.54 -0.3 747,727 - SM_b21105 0.54 -1.5 747,727 - SM_b21105 0.54 +2.2 747,922 - SM_b21105 0.77 -0.0 747,942 - SM_b21105 0.79 +0.1 747,987 + SM_b21105 0.84 -1.0 748,142 + +0.6 748,380 + SM_b21106 0.23 -1.8 748,380 + SM_b21106 0.23 -1.3 748,380 + SM_b21106 0.23 -0.1 748,380 + SM_b21106 0.23 -0.2 748,380 + SM_b21106 0.23 -1.6 748,381 - SM_b21106 0.23 +0.5 748,381 - SM_b21106 0.23 -0.5 748,381 - SM_b21106 0.23 -0.2 748,381 - SM_b21106 0.23 -0.6 748,397 + SM_b21106 0.24 -1.7 748,397 + SM_b21106 0.24 -0.4 748,398 - SM_b21106 0.24 +0.5 748,398 - SM_b21106 0.24 -0.9 748,415 + SM_b21106 0.26 +1.7 748,613 - SM_b21106 0.44 -0.7 748,613 - SM_b21106 0.44 +0.9 748,695 + SM_b21106 0.51 +1.1 748,695 + SM_b21106 0.51 +0.3 748,695 + SM_b21106 0.51 -1.0 748,696 - SM_b21106 0.51 +0.7 748,696 - SM_b21106 0.51 -1.1 748,696 - SM_b21106 0.51 +0.7 748,696 - SM_b21106 0.51 -1.5 748,696 - SM_b21106 0.51 +0.2 748,696 - SM_b21106 0.51 +0.1 748,983 + SM_b21106 0.78 +0.7 748,983 + SM_b21106 0.78 +0.1 748,984 - SM_b21106 0.78 -0.2 748,984 - SM_b21106 0.78 -0.7 749,235 + -0.6 749,372 - SM_b21107 0.13 -0.2 749,636 - SM_b21107 0.36 +0.6 749,636 - SM_b21107 0.36 -1.1 749,761 + SM_b21107 0.48 -0.6 749,761 + SM_b21107 0.48 -0.4 749,762 - SM_b21107 0.48 +0.4 749,762 - SM_b21107 0.48 +0.8 749,762 - SM_b21107 0.48 +0.8 749,762 - SM_b21107 0.48 -0.4 749,983 + SM_b21107 0.68 +1.3 750,007 + SM_b21107 0.70 -2.3 750,008 - -0.3 750,008 - SM_b21107 0.70 +0.4 750,008 - SM_b21107 0.70 +0.6 750,009 + SM_b21107 0.70 -1.8 750,009 + SM_b21107 0.70 -0.1 750,010 - SM_b21107 0.70 +2.1 750,178 + SM_b21107 0.85 +1.1 750,179 - SM_b21107 0.85 +0.5 750,188 - SM_b21107 0.86 +0.2
Or see this region's nucleotide sequence