Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21106

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21104 and SM_b21105 overlap by 1 nucleotidesSM_b21105 and SM_b21106 are separated by 6 nucleotidesSM_b21106 and SM_b21107 are separated by 1 nucleotides SM_b21104: SM_b21104 - ABC transporter for L-Fucose, permease component 1 (from data), at 746,362 to 747,258 _b21104 SM_b21105: SM_b21105 - ABC transporter for L-Fucose, permease component 2 (from data), at 747,258 to 748,124 _b21105 SM_b21106: SM_b21106 - ABC transporter for L-Fucose, ATPase component (from data), at 748,131 to 749,228 _b21106 SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism (from data), at 749,230 to 750,342 _b21107 Position (kb) 748 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 747.131 kb on - strand, within SM_b21104at 747.170 kb on - strandat 747.170 kb on - strandat 747.205 kb on + strandat 747.256 kb on + strandat 747.256 kb on + strandat 747.263 kb on + strandat 747.263 kb on + strandat 747.521 kb on - strand, within SM_b21105at 747.678 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.726 kb on + strand, within SM_b21105at 747.727 kb on - strand, within SM_b21105at 747.727 kb on - strand, within SM_b21105at 747.922 kb on - strand, within SM_b21105at 747.942 kb on - strand, within SM_b21105at 747.987 kb on + strand, within SM_b21105at 748.142 kb on + strandat 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.380 kb on + strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.381 kb on - strand, within SM_b21106at 748.397 kb on + strand, within SM_b21106at 748.397 kb on + strand, within SM_b21106at 748.398 kb on - strand, within SM_b21106at 748.398 kb on - strand, within SM_b21106at 748.415 kb on + strand, within SM_b21106at 748.613 kb on - strand, within SM_b21106at 748.613 kb on - strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.695 kb on + strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.696 kb on - strand, within SM_b21106at 748.983 kb on + strand, within SM_b21106at 748.983 kb on + strand, within SM_b21106at 748.984 kb on - strand, within SM_b21106at 748.984 kb on - strand, within SM_b21106at 749.235 kb on + strandat 749.372 kb on - strand, within SM_b21107at 749.636 kb on - strand, within SM_b21107at 749.636 kb on - strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.761 kb on + strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.762 kb on - strand, within SM_b21107at 749.983 kb on + strand, within SM_b21107at 750.007 kb on + strand, within SM_b21107at 750.008 kb on - strandat 750.008 kb on - strand, within SM_b21107at 750.008 kb on - strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.009 kb on + strand, within SM_b21107at 750.010 kb on - strand, within SM_b21107at 750.178 kb on + strand, within SM_b21107at 750.179 kb on - strand, within SM_b21107at 750.188 kb on - strand, within SM_b21107

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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747,131 - SM_b21104 0.86 +0.1
747,170 - -1.1
747,170 - +0.5
747,205 + -0.9
747,256 + +0.6
747,256 + +0.0
747,263 + +0.6
747,263 + -0.0
747,521 - SM_b21105 0.30 +0.2
747,678 + SM_b21105 0.48 -1.2
747,726 + SM_b21105 0.54 -0.2
747,726 + SM_b21105 0.54 -0.0
747,726 + SM_b21105 0.54 -0.9
747,726 + SM_b21105 0.54 +0.1
747,726 + SM_b21105 0.54 -0.3
747,727 - SM_b21105 0.54 -1.5
747,727 - SM_b21105 0.54 +2.2
747,922 - SM_b21105 0.77 -0.0
747,942 - SM_b21105 0.79 +0.1
747,987 + SM_b21105 0.84 -1.0
748,142 + +0.6
748,380 + SM_b21106 0.23 -1.8
748,380 + SM_b21106 0.23 -1.3
748,380 + SM_b21106 0.23 -0.1
748,380 + SM_b21106 0.23 -0.2
748,380 + SM_b21106 0.23 -1.6
748,381 - SM_b21106 0.23 +0.5
748,381 - SM_b21106 0.23 -0.5
748,381 - SM_b21106 0.23 -0.2
748,381 - SM_b21106 0.23 -0.6
748,397 + SM_b21106 0.24 -1.7
748,397 + SM_b21106 0.24 -0.4
748,398 - SM_b21106 0.24 +0.5
748,398 - SM_b21106 0.24 -0.9
748,415 + SM_b21106 0.26 +1.7
748,613 - SM_b21106 0.44 -0.7
748,613 - SM_b21106 0.44 +0.9
748,695 + SM_b21106 0.51 +1.1
748,695 + SM_b21106 0.51 +0.3
748,695 + SM_b21106 0.51 -1.0
748,696 - SM_b21106 0.51 +0.7
748,696 - SM_b21106 0.51 -1.1
748,696 - SM_b21106 0.51 +0.7
748,696 - SM_b21106 0.51 -1.5
748,696 - SM_b21106 0.51 +0.2
748,696 - SM_b21106 0.51 +0.1
748,983 + SM_b21106 0.78 +0.7
748,983 + SM_b21106 0.78 +0.1
748,984 - SM_b21106 0.78 -0.2
748,984 - SM_b21106 0.78 -0.7
749,235 + -0.6
749,372 - SM_b21107 0.13 -0.2
749,636 - SM_b21107 0.36 +0.6
749,636 - SM_b21107 0.36 -1.1
749,761 + SM_b21107 0.48 -0.6
749,761 + SM_b21107 0.48 -0.4
749,762 - SM_b21107 0.48 +0.4
749,762 - SM_b21107 0.48 +0.8
749,762 - SM_b21107 0.48 +0.8
749,762 - SM_b21107 0.48 -0.4
749,983 + SM_b21107 0.68 +1.3
750,007 + SM_b21107 0.70 -2.3
750,008 - -0.3
750,008 - SM_b21107 0.70 +0.4
750,008 - SM_b21107 0.70 +0.6
750,009 + SM_b21107 0.70 -1.8
750,009 + SM_b21107 0.70 -0.1
750,010 - SM_b21107 0.70 +2.1
750,178 + SM_b21107 0.85 +1.1
750,179 - SM_b21107 0.85 +0.5
750,188 - SM_b21107 0.86 +0.2

Or see this region's nucleotide sequence