Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21086 and SM_b21087 are separated by 144 nucleotides SM_b21087 and SM_b21088 are separated by 323 nucleotides SM_b21088 and SM_b21089 are separated by 162 nucleotides
SM_b21086: SM_b21086 - hypothetical protein, at 725,358 to 725,834
_b21086
SM_b21087: SM_b21087 - conjugal transfer protein, at 725,979 to 730,598
_b21087
SM_b21088: SM_b21088 - hypothetical protein, at 730,922 to 731,137
_b21088
SM_b21089: SM_b21089 - membrane-anchored racemase, at 731,300 to 732,370
_b21089
Position (kb) 725
726
727
728
729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 725.064 kb on + strand at 725.122 kb on + strand at 725.122 kb on + strand at 725.123 kb on - strand at 725.123 kb on - strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.125 kb on + strand at 725.126 kb on - strand at 725.126 kb on - strand at 725.167 kb on - strand at 725.230 kb on + strand at 725.231 kb on - strand at 725.231 kb on - strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.354 kb on + strand at 725.355 kb on - strand at 725.375 kb on - strand at 725.375 kb on - strand at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.412 kb on + strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.413 kb on - strand, within SM_b21086 at 725.451 kb on + strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.452 kb on - strand, within SM_b21086 at 725.492 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.496 kb on - strand, within SM_b21086 at 725.506 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.543 kb on - strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.550 kb on + strand, within SM_b21086 at 725.802 kb on + strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.803 kb on - strand at 725.823 kb on + strand at 725.827 kb on + strand at 725.854 kb on - strand at 725.877 kb on - strand at 725.937 kb on - strand at 725.937 kb on - strand at 726.102 kb on + strand at 726.381 kb on + strand at 726.381 kb on + strand at 726.877 kb on - strand, within SM_b21087 at 728.333 kb on + strand, within SM_b21087 at 728.433 kb on + strand, within SM_b21087 at 728.502 kb on - strand, within SM_b21087 at 730.571 kb on + strand at 730.589 kb on + strand at 730.590 kb on - strand at 730.590 kb on - strand at 730.596 kb on + strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.597 kb on - strand at 730.677 kb on - strand at 730.784 kb on + strand at 730.784 kb on + strand at 730.785 kb on - strand at 730.912 kb on + strand at 730.912 kb on + strand at 730.913 kb on - strand at 730.938 kb on - strand at 730.998 kb on + strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 730.999 kb on - strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.015 kb on + strand, within SM_b21088 at 731.106 kb on + strand, within SM_b21088 at 731.141 kb on + strand at 731.141 kb on + strand at 731.142 kb on - strand at 731.142 kb on - strand at 731.155 kb on - strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.291 kb on + strand at 731.292 kb on - strand at 731.295 kb on + strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.296 kb on - strand at 731.372 kb on + strand at 731.373 kb on - strand at 731.532 kb on + strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089 at 731.594 kb on - strand, within SM_b21089
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 725,064 + -0.3 725,122 + +1.8 725,122 + -1.7 725,123 - -1.3 725,123 - -0.9 725,125 + -0.6 725,125 + +1.3 725,125 + -0.2 725,126 - +1.6 725,126 - -0.6 725,167 - +0.8 725,230 + -0.2 725,231 - +0.7 725,231 - -1.6 725,354 + +0.1 725,354 + -0.4 725,354 + -0.4 725,355 - +1.1 725,375 - -0.1 725,375 - +1.1 725,412 + SM_b21086 0.11 -0.8 725,412 + SM_b21086 0.11 -0.8 725,412 + SM_b21086 0.11 +1.2 725,413 - SM_b21086 0.12 -0.3 725,413 - SM_b21086 0.12 +0.0 725,413 - SM_b21086 0.12 -0.0 725,451 + SM_b21086 0.19 -0.3 725,452 - SM_b21086 0.20 -0.8 725,452 - SM_b21086 0.20 +0.5 725,452 - SM_b21086 0.20 -1.5 725,492 - SM_b21086 0.28 -1.7 725,496 - SM_b21086 0.29 +0.6 725,496 - SM_b21086 0.29 -1.0 725,506 - SM_b21086 0.31 +0.3 725,543 - SM_b21086 0.39 -0.9 725,543 - SM_b21086 0.39 -0.4 725,550 + SM_b21086 0.40 +0.2 725,550 + SM_b21086 0.40 -1.2 725,802 + +0.3 725,803 - +0.9 725,803 - +0.4 725,803 - +0.1 725,803 - -2.3 725,803 - -0.9 725,823 + +3.2 725,827 + -0.1 725,854 - +1.1 725,877 - +0.7 725,937 - -1.1 725,937 - +0.4 726,102 + -0.3 726,381 + -0.5 726,381 + -0.3 726,877 - SM_b21087 0.19 +4.0 728,333 + SM_b21087 0.51 -0.1 728,433 + SM_b21087 0.53 -0.2 728,502 - SM_b21087 0.55 -0.2 730,571 + +1.2 730,589 + +0.1 730,590 - -2.4 730,590 - -1.3 730,596 + -0.7 730,597 - -0.1 730,597 - -0.7 730,597 - +0.4 730,677 - +0.5 730,784 + +0.1 730,784 + +0.3 730,785 - +1.0 730,912 + +0.9 730,912 + +1.3 730,913 - +1.3 730,938 - -1.5 730,998 + SM_b21088 0.35 -0.3 730,999 - SM_b21088 0.36 -0.7 730,999 - SM_b21088 0.36 -1.0 730,999 - SM_b21088 0.36 -0.9 730,999 - SM_b21088 0.36 +0.3 731,015 + SM_b21088 0.43 +1.3 731,015 + SM_b21088 0.43 -1.7 731,015 + SM_b21088 0.43 -0.2 731,106 + SM_b21088 0.85 -0.7 731,141 + +0.4 731,141 + -0.0 731,142 - -0.1 731,142 - -0.1 731,155 - -0.0 731,291 + +0.3 731,291 + +0.1 731,291 + -1.4 731,292 - +0.5 731,295 + +0.2 731,296 - -0.8 731,296 - -0.4 731,296 - -1.3 731,296 - +0.2 731,372 + +1.6 731,373 - -0.4 731,532 + SM_b21089 0.22 -0.2 731,594 - SM_b21089 0.27 +1.2 731,594 - SM_b21089 0.27 +0.1
Or see this region's nucleotide sequence