Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21070 and SM_b21071 are separated by 413 nucleotides SM_b21071 and SM_b21072 are separated by 44 nucleotides SM_b21072 and SM_b21073 are separated by 427 nucleotides
SM_b21070: SM_b21070 - MPA1 family auxiliary surface saccharide export protein, at 705,774 to 707,672
_b21070
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
SM_b21072: SM_b21072 - hypothetical protein, at 708,781 to 709,035
_b21072
SM_b21073: SM_b21073 - OMA family outer membrane saccharide export protein, at 709,463 to 710,830
_b21073
Position (kb) 708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 707.087 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.188 kb on - strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.306 kb on - strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.408 kb on - strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.621 kb on + strand at 707.621 kb on + strand at 707.621 kb on + strand at 707.722 kb on + strand at 707.789 kb on + strand at 707.789 kb on + strand at 707.792 kb on + strand at 707.792 kb on + strand at 707.793 kb on - strand at 707.795 kb on + strand at 707.795 kb on + strand at 707.796 kb on - strand at 707.823 kb on + strand at 707.868 kb on + strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.873 kb on - strand at 708.055 kb on + strand at 708.055 kb on + strand at 708.056 kb on - strand at 708.196 kb on - strand, within SM_b21071 at 708.293 kb on + strand, within SM_b21071 at 708.296 kb on - strand, within SM_b21071 at 708.341 kb on + strand, within SM_b21071 at 708.342 kb on - strand, within SM_b21071 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071 at 708.695 kb on - strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.734 kb on + strand at 708.755 kb on + strand at 708.755 kb on + strand at 708.756 kb on - strand at 708.845 kb on + strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.846 kb on - strand, within SM_b21072 at 708.849 kb on + strand, within SM_b21072 at 708.850 kb on - strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.856 kb on + strand, within SM_b21072 at 708.872 kb on + strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 708.873 kb on - strand, within SM_b21072 at 709.035 kb on + strand at 709.147 kb on + strand at 709.178 kb on + strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.179 kb on - strand at 709.291 kb on + strand at 709.292 kb on - strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.382 kb on + strand at 709.383 kb on - strand at 709.383 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.424 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.444 kb on + strand at 709.445 kb on - strand at 709.445 kb on - strand at 709.452 kb on + strand at 709.453 kb on - strand at 709.453 kb on - strand at 709.465 kb on - strand at 709.662 kb on + strand, within SM_b21073 at 709.662 kb on + strand, within SM_b21073
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 707,087 + SM_b21070 0.69 -0.9 707,187 + SM_b21070 0.74 -0.8 707,187 + SM_b21070 0.74 -0.9 707,187 + SM_b21070 0.74 +0.3 707,188 - SM_b21070 0.74 -1.4 707,305 + SM_b21070 0.81 +0.9 707,305 + SM_b21070 0.81 -2.0 707,306 - SM_b21070 0.81 -1.1 707,384 + SM_b21070 0.85 -1.5 707,384 + SM_b21070 0.85 -0.0 707,384 + SM_b21070 0.85 +0.1 707,408 - SM_b21070 0.86 +0.8 707,430 + SM_b21070 0.87 +1.3 707,430 + SM_b21070 0.87 -1.5 707,430 + SM_b21070 0.87 -1.2 707,431 - SM_b21070 0.87 -2.5 707,431 - SM_b21070 0.87 -0.7 707,431 - SM_b21070 0.87 -0.5 707,431 - SM_b21070 0.87 +0.0 707,621 + -0.7 707,621 + -1.8 707,621 + -1.0 707,722 + -0.8 707,789 + -2.0 707,789 + -0.7 707,792 + +0.1 707,792 + -0.9 707,793 - -0.0 707,795 + -0.8 707,795 + -1.3 707,796 - -0.1 707,823 + -0.8 707,868 + -1.7 707,869 - +0.8 707,869 - +0.2 707,869 - -0.8 707,873 - -1.0 708,055 + +0.3 708,055 + -1.3 708,056 - -2.8 708,196 - SM_b21071 0.17 +0.7 708,293 + SM_b21071 0.32 -0.2 708,296 - SM_b21071 0.32 -0.2 708,341 + SM_b21071 0.39 -0.5 708,342 - SM_b21071 0.39 +1.2 708,473 - SM_b21071 0.59 +0.9 708,597 + SM_b21071 0.78 +0.5 708,597 + SM_b21071 0.78 -0.9 708,597 + SM_b21071 0.78 -0.5 708,598 - SM_b21071 0.79 +1.4 708,598 - SM_b21071 0.79 -0.7 708,598 - SM_b21071 0.79 +1.3 708,598 - SM_b21071 0.79 -0.4 708,620 + SM_b21071 0.82 +1.0 708,621 - SM_b21071 0.82 +1.1 708,650 + SM_b21071 0.87 +1.2 708,651 - SM_b21071 0.87 +0.0 708,651 - SM_b21071 0.87 +0.6 708,651 - SM_b21071 0.87 +2.9 708,655 - SM_b21071 0.87 -1.7 708,695 - -0.4 708,734 + -0.3 708,734 + -1.4 708,734 + -0.9 708,755 + -0.7 708,755 + +0.6 708,756 - +0.7 708,845 + SM_b21072 0.25 -0.5 708,846 - SM_b21072 0.25 -0.2 708,846 - SM_b21072 0.25 -0.0 708,846 - SM_b21072 0.25 -0.0 708,849 + SM_b21072 0.27 -0.8 708,850 - SM_b21072 0.27 +0.7 708,856 + SM_b21072 0.29 +0.0 708,856 + SM_b21072 0.29 -0.9 708,856 + SM_b21072 0.29 +0.6 708,872 + SM_b21072 0.36 +1.5 708,873 - SM_b21072 0.36 +0.5 708,873 - SM_b21072 0.36 +1.5 709,035 + -1.5 709,147 + +0.3 709,178 + -1.5 709,179 - -0.2 709,179 - -1.6 709,179 - +0.6 709,179 - +0.7 709,179 - +0.1 709,179 - +0.5 709,291 + +0.0 709,292 - -0.6 709,382 + -0.3 709,382 + -0.7 709,382 + +0.8 709,382 + +0.1 709,382 + -0.5 709,382 + -0.0 709,383 - +0.2 709,383 - -2.6 709,390 + +1.1 709,390 + +0.9 709,424 + -0.0 709,444 + +0.3 709,444 + +2.5 709,444 + +0.4 709,445 - +0.1 709,445 - -2.0 709,452 + +0.3 709,453 - -0.1 709,453 - -0.3 709,465 - +2.1 709,662 + SM_b21073 0.15 -1.3 709,662 + SM_b21073 0.15 +0.7
Or see this region's nucleotide sequence