Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21053 and SM_b21054 are separated by 88 nucleotides SM_b21054 and SM_b21055 are separated by 232 nucleotides SM_b21055 and SM_b21056 are separated by 134 nucleotides
SM_b21053: SM_b21053 - membrane-anchored glycosyltransferase, at 686,566 to 687,816
_b21053
SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522
_b21054
SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339
_b21055
SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801
_b21056
Position (kb) 688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 687.786 kb on - strand at 687.797 kb on - strand at 687.824 kb on + strand at 687.824 kb on + strand at 687.824 kb on + strand at 687.825 kb on - strand at 687.831 kb on + strand at 687.831 kb on + strand at 687.831 kb on + strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.832 kb on - strand at 687.947 kb on - strand at 687.947 kb on - strand at 687.947 kb on - strand at 687.949 kb on - strand at 687.949 kb on - strand at 687.961 kb on - strand at 688.015 kb on + strand, within SM_b21054 at 688.051 kb on - strand, within SM_b21054 at 688.190 kb on - strand, within SM_b21054 at 688.204 kb on - strand, within SM_b21054 at 688.204 kb on - strand, within SM_b21054 at 688.216 kb on + strand, within SM_b21054 at 688.217 kb on - strand, within SM_b21054 at 688.249 kb on + strand, within SM_b21054 at 688.250 kb on - strand, within SM_b21054 at 688.276 kb on + strand, within SM_b21054 at 688.286 kb on + strand, within SM_b21054 at 688.287 kb on - strand, within SM_b21054 at 688.302 kb on + strand, within SM_b21054 at 688.395 kb on + strand, within SM_b21054 at 688.406 kb on - strand, within SM_b21054 at 688.447 kb on + strand, within SM_b21054 at 688.518 kb on + strand at 688.518 kb on + strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.519 kb on - strand at 688.545 kb on - strand at 688.565 kb on + strand at 688.566 kb on - strand at 688.566 kb on - strand at 688.613 kb on + strand at 688.614 kb on - strand at 688.641 kb on - strand at 688.641 kb on - strand at 688.680 kb on + strand at 688.718 kb on + strand at 689.059 kb on + strand, within SM_b21055 at 689.059 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.188 kb on + strand, within SM_b21055 at 689.189 kb on - strand, within SM_b21055 at 689.193 kb on - strand, within SM_b21055 at 689.369 kb on + strand at 689.410 kb on - strand at 689.427 kb on + strand at 689.468 kb on + strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.469 kb on - strand at 689.475 kb on + strand at 689.530 kb on + strand at 689.530 kb on + strand at 689.726 kb on + strand, within SM_b21056 at 689.727 kb on - strand, within SM_b21056 at 689.752 kb on + strand, within SM_b21056 at 689.752 kb on + strand, within SM_b21056 at 689.753 kb on - strand, within SM_b21056 at 689.753 kb on - strand, within SM_b21056 at 690.057 kb on - strand, within SM_b21056 at 690.057 kb on - strand, within SM_b21056 at 690.086 kb on + strand, within SM_b21056 at 690.087 kb on - strand, within SM_b21056 at 690.087 kb on - strand, within SM_b21056 at 690.227 kb on + strand, within SM_b21056 at 690.227 kb on + strand, within SM_b21056 at 690.228 kb on - strand, within SM_b21056
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 687,786 - +0.2 687,797 - -0.5 687,824 + -0.8 687,824 + -0.3 687,824 + -0.3 687,825 - -0.6 687,831 + +1.0 687,831 + +0.3 687,831 + -0.5 687,832 - -0.1 687,832 - +0.2 687,832 - -0.2 687,832 - +0.1 687,947 - -0.0 687,947 - -1.5 687,947 - -0.0 687,949 - +2.1 687,949 - -0.9 687,961 - +0.2 688,015 + SM_b21054 0.18 +0.9 688,051 - SM_b21054 0.24 +0.1 688,190 - SM_b21054 0.46 -1.4 688,204 - SM_b21054 0.48 -0.2 688,204 - SM_b21054 0.48 -0.3 688,216 + SM_b21054 0.50 -0.4 688,217 - SM_b21054 0.50 +0.6 688,249 + SM_b21054 0.56 -2.0 688,250 - SM_b21054 0.56 -0.6 688,276 + SM_b21054 0.60 -0.5 688,286 + SM_b21054 0.62 -1.0 688,287 - SM_b21054 0.62 +0.2 688,302 + SM_b21054 0.64 -0.9 688,395 + SM_b21054 0.79 -1.2 688,406 - SM_b21054 0.81 +1.3 688,447 + SM_b21054 0.88 +0.3 688,518 + -0.3 688,518 + -0.7 688,519 - +0.7 688,519 - +0.1 688,519 - +2.3 688,519 - -0.2 688,545 - -0.4 688,565 + -0.1 688,566 - -0.2 688,566 - +0.1 688,613 + -3.0 688,614 - +1.3 688,641 - -1.0 688,641 - -1.5 688,680 + -0.4 688,718 + -0.6 689,059 + SM_b21055 0.52 +0.8 689,059 + SM_b21055 0.52 -0.2 689,188 + SM_b21055 0.74 +0.5 689,188 + SM_b21055 0.74 +0.2 689,189 - SM_b21055 0.74 +1.7 689,193 - SM_b21055 0.75 +0.2 689,369 + -0.6 689,410 - -0.6 689,427 + -0.2 689,468 + +0.3 689,469 - -1.7 689,469 - -0.8 689,469 - +0.1 689,475 + -0.3 689,530 + +1.0 689,530 + -0.7 689,726 + SM_b21056 0.11 +1.5 689,727 - SM_b21056 0.11 -0.7 689,752 + SM_b21056 0.12 +3.3 689,752 + SM_b21056 0.12 -0.3 689,753 - SM_b21056 0.12 -0.9 689,753 - SM_b21056 0.12 -0.8 690,057 - SM_b21056 0.25 +0.6 690,057 - SM_b21056 0.25 -0.2 690,086 + SM_b21056 0.26 +0.3 690,087 - SM_b21056 0.26 -0.2 690,087 - SM_b21056 0.26 -1.0 690,227 + SM_b21056 0.32 +1.7 690,227 + SM_b21056 0.32 +0.8 690,228 - SM_b21056 0.32 -0.8
Or see this region's nucleotide sequence