Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20919 and SM_b20920 overlap by 51 nucleotides SM_b20920 and SM_b20921 are separated by 54 nucleotides SM_b20921 and SM_b20922 overlap by 116 nucleotides SM_b20922 and SM_b21395 are separated by 26 nucleotides
SM_b20919: SM_b20919 - transposase of insertion sequence ISRm1 orfB protein, at 1,326,279 to 1,327,109
_b20919
SM_b20920: SM_b20920 - hypothetical protein, at 1,327,059 to 1,327,481
_b20920
SM_b20921: SM_b20921 - hypothetical protein, at 1,327,536 to 1,327,778
_b20921
SM_b20922: SM_b20922 - hypothetical protein, at 1,327,663 to 1,328,715
_b20922
SM_b21395: SM_b21395 - hypothetical protein, at 1,328,742 to 1,329,278
_b21395
Position (kb)
1327
1328 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1327.187 kb on + strand, within SM_b20920 at 1327.191 kb on + strand, within SM_b20920 at 1327.192 kb on - strand, within SM_b20920 at 1327.192 kb on - strand, within SM_b20920 at 1327.192 kb on - strand, within SM_b20920 at 1327.440 kb on - strand at 1327.448 kb on + strand at 1327.449 kb on - strand at 1327.449 kb on - strand at 1327.451 kb on - strand at 1327.522 kb on + strand at 1327.522 kb on + strand at 1327.537 kb on + strand at 1327.618 kb on - strand, within SM_b20921 at 1327.618 kb on - strand, within SM_b20921 at 1327.900 kb on + strand, within SM_b20922 at 1327.901 kb on - strand, within SM_b20922 at 1327.901 kb on - strand, within SM_b20922 at 1328.016 kb on + strand, within SM_b20922 at 1328.016 kb on + strand, within SM_b20922 at 1328.017 kb on - strand, within SM_b20922 at 1328.211 kb on + strand, within SM_b20922 at 1328.212 kb on - strand, within SM_b20922 at 1328.438 kb on + strand, within SM_b20922 at 1328.438 kb on + strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.439 kb on - strand, within SM_b20922 at 1328.549 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.597 kb on + strand, within SM_b20922 at 1328.648 kb on + strand at 1328.774 kb on - strand at 1328.774 kb on - strand at 1328.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,327,187 + SM_b20920 0.30 +0.3 1,327,191 + SM_b20920 0.31 -0.6 1,327,192 - SM_b20920 0.31 +0.0 1,327,192 - SM_b20920 0.31 -1.2 1,327,192 - SM_b20920 0.31 +0.0 1,327,440 - -2.2 1,327,448 + -0.8 1,327,449 - +0.3 1,327,449 - -0.4 1,327,451 - +1.0 1,327,522 + -0.8 1,327,522 + -0.5 1,327,537 + -0.5 1,327,618 - SM_b20921 0.34 -2.1 1,327,618 - SM_b20921 0.34 -0.7 1,327,900 + SM_b20922 0.23 +1.4 1,327,901 - SM_b20922 0.23 +0.0 1,327,901 - SM_b20922 0.23 -1.4 1,328,016 + SM_b20922 0.34 +0.6 1,328,016 + SM_b20922 0.34 +0.6 1,328,017 - SM_b20922 0.34 +0.0 1,328,211 + SM_b20922 0.52 -0.6 1,328,212 - SM_b20922 0.52 -3.5 1,328,438 + SM_b20922 0.74 +0.3 1,328,438 + SM_b20922 0.74 +0.4 1,328,439 - SM_b20922 0.74 -0.3 1,328,439 - SM_b20922 0.74 -1.1 1,328,549 + SM_b20922 0.84 -0.9 1,328,597 + SM_b20922 0.89 -0.3 1,328,597 + SM_b20922 0.89 +0.0 1,328,597 + SM_b20922 0.89 +0.6 1,328,648 + -0.0 1,328,774 - -0.2 1,328,774 - +0.9 1,328,774 - -0.6
Or see this region's nucleotide sequence