Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20823 and SM_b20824 are separated by 610 nucleotides SM_b20824 and SM_b20825 are separated by 164 nucleotides
SM_b20823: SM_b20823 - cell surface saccharide synthesis protein, at 611,880 to 612,911
_b20823
SM_b20824: SM_b20824 - hypothetical protein, at 613,522 to 615,858
_b20824
SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793
_b20825
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 612.541 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.593 kb on + strand, within SM_b20823 at 612.594 kb on - strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.677 kb on - strand, within SM_b20823 at 612.681 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.859 kb on - strand at 612.859 kb on - strand at 612.955 kb on - strand at 613.022 kb on + strand at 613.022 kb on + strand at 613.023 kb on - strand at 613.119 kb on + strand at 613.120 kb on - strand at 613.125 kb on + strand at 613.125 kb on + strand at 613.126 kb on - strand at 613.126 kb on - strand at 613.213 kb on + strand at 613.214 kb on - strand at 613.226 kb on - strand at 613.226 kb on - strand at 613.229 kb on + strand at 613.229 kb on + strand at 613.230 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.242 kb on + strand at 613.323 kb on + strand at 613.338 kb on + strand at 613.338 kb on + strand at 613.357 kb on + strand at 613.371 kb on + strand at 613.429 kb on - strand at 613.429 kb on - strand at 613.448 kb on - strand at 613.532 kb on - strand at 613.532 kb on - strand at 613.569 kb on - strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.703 kb on - strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.768 kb on - strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.814 kb on - strand, within SM_b20824 at 613.823 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.015 kb on + strand, within SM_b20824 at 614.016 kb on - strand, within SM_b20824 at 614.016 kb on - strand, within SM_b20824 at 614.085 kb on - strand, within SM_b20824 at 614.124 kb on + strand, within SM_b20824 at 614.166 kb on + strand, within SM_b20824 at 614.166 kb on + strand, within SM_b20824 at 614.167 kb on - strand, within SM_b20824 at 614.423 kb on - strand, within SM_b20824 at 614.435 kb on + strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.436 kb on - strand, within SM_b20824 at 614.513 kb on + strand, within SM_b20824 at 614.531 kb on + strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.532 kb on - strand, within SM_b20824 at 614.535 kb on - strand, within SM_b20824 at 614.613 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.634 kb on + strand, within SM_b20824 at 614.635 kb on - strand, within SM_b20824 at 614.636 kb on + strand, within SM_b20824 at 614.637 kb on - strand, within SM_b20824 at 614.637 kb on - strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.762 kb on + strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.763 kb on - strand, within SM_b20824 at 614.766 kb on - strand, within SM_b20824 at 614.766 kb on - strand, within SM_b20824 at 614.858 kb on + strand, within SM_b20824 at 615.096 kb on + strand, within SM_b20824 at 615.096 kb on + strand, within SM_b20824 at 615.097 kb on - strand, within SM_b20824 at 615.099 kb on - strand, within SM_b20824 at 615.162 kb on - strand, within SM_b20824 at 615.263 kb on + strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.264 kb on - strand, within SM_b20824 at 615.303 kb on + strand, within SM_b20824 at 615.304 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.522 kb on - strand, within SM_b20824 at 615.548 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.571 kb on + strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.572 kb on - strand, within SM_b20824 at 615.644 kb on + strand at 615.644 kb on + strand at 615.645 kb on - strand at 615.647 kb on + strand at 615.647 kb on + strand at 615.648 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.794 kb on - strand at 615.872 kb on + strand at 615.872 kb on + strand at 615.873 kb on - strand at 615.893 kb on + strand at 615.894 kb on - strand at 615.956 kb on + strand at 615.971 kb on - strand at 616.036 kb on + strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.037 kb on - strand at 616.058 kb on + strand at 616.058 kb on + strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.059 kb on - strand at 616.070 kb on + strand at 616.070 kb on + strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.071 kb on - strand at 616.088 kb on + strand at 616.089 kb on - strand at 616.139 kb on + strand, within SM_b20825 at 616.140 kb on - strand at 616.191 kb on + strand, within SM_b20825 at 616.192 kb on - strand, within SM_b20825 at 616.290 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.296 kb on - strand, within SM_b20825 at 616.478 kb on + strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.479 kb on - strand, within SM_b20825 at 616.535 kb on + strand, within SM_b20825 at 616.536 kb on - strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.554 kb on + strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.555 kb on - strand, within SM_b20825 at 616.697 kb on + strand, within SM_b20825 at 616.698 kb on - strand, within SM_b20825 at 616.740 kb on + strand at 616.763 kb on + strand at 616.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 612,541 + SM_b20823 0.64 -1.8 612,549 + SM_b20823 0.65 -0.2 612,549 + SM_b20823 0.65 -0.3 612,549 + SM_b20823 0.65 -0.1 612,549 + SM_b20823 0.65 -0.6 612,549 + SM_b20823 0.65 -0.4 612,589 + SM_b20823 0.69 -1.7 612,589 + SM_b20823 0.69 +2.0 612,590 - SM_b20823 0.69 -2.1 612,590 - SM_b20823 0.69 -0.7 612,593 + SM_b20823 0.69 -0.8 612,594 - SM_b20823 0.69 -0.0 612,676 + SM_b20823 0.77 -0.3 612,676 + SM_b20823 0.77 +0.4 612,676 + SM_b20823 0.77 -2.3 612,677 - SM_b20823 0.77 -0.7 612,681 - SM_b20823 0.78 -0.8 612,772 - SM_b20823 0.86 -2.1 612,772 - SM_b20823 0.86 -0.5 612,859 - -1.5 612,859 - -1.8 612,955 - -3.2 613,022 + -1.5 613,022 + -1.6 613,023 - -0.4 613,119 + +1.3 613,120 - -0.8 613,125 + +0.0 613,125 + +1.1 613,126 - -1.0 613,126 - -0.1 613,213 + +0.6 613,214 - -1.0 613,226 - -0.7 613,226 - -1.0 613,229 + -0.9 613,229 + +2.0 613,230 - +0.2 613,237 + -1.0 613,237 + +0.5 613,242 + -0.1 613,323 + +0.5 613,338 + -0.3 613,338 + +0.2 613,357 + -0.6 613,371 + -0.2 613,429 - +0.9 613,429 - -1.9 613,448 - +0.9 613,532 - +2.9 613,532 - +1.3 613,569 - -0.1 613,632 + -2.1 613,632 + +1.0 613,632 + -0.1 613,633 - +1.0 613,633 - -1.8 613,633 - +1.0 613,689 + +0.1 613,689 + -0.4 613,689 + +0.4 613,689 + -1.5 613,690 - +3.7 613,690 - -1.1 613,690 - -0.4 613,690 - -0.2 613,690 - +0.1 613,690 - -1.8 613,703 - +0.3 613,730 + -1.4 613,730 + -0.1 613,730 + -2.7 613,731 - +0.6 613,731 - -0.7 613,731 - +0.3 613,731 - +0.4 613,768 - SM_b20824 0.11 +0.6 613,813 + SM_b20824 0.12 +0.3 613,813 + SM_b20824 0.12 -2.1 613,813 + SM_b20824 0.12 -1.0 613,814 - SM_b20824 0.12 -1.5 613,823 + SM_b20824 0.13 +0.2 614,015 + SM_b20824 0.21 -1.1 614,015 + SM_b20824 0.21 +0.1 614,015 + SM_b20824 0.21 +0.4 614,015 + SM_b20824 0.21 -1.4 614,015 + SM_b20824 0.21 -1.8 614,016 - SM_b20824 0.21 -0.3 614,016 - SM_b20824 0.21 -0.3 614,085 - SM_b20824 0.24 -1.8 614,124 + SM_b20824 0.26 -1.5 614,166 + SM_b20824 0.28 -2.6 614,166 + SM_b20824 0.28 -0.4 614,167 - SM_b20824 0.28 +0.3 614,423 - SM_b20824 0.39 +2.4 614,435 + SM_b20824 0.39 -0.2 614,436 - SM_b20824 0.39 +1.3 614,436 - SM_b20824 0.39 -0.0 614,436 - SM_b20824 0.39 +1.2 614,513 + SM_b20824 0.42 +0.7 614,531 + SM_b20824 0.43 +0.1 614,532 - SM_b20824 0.43 -0.4 614,532 - SM_b20824 0.43 +0.4 614,532 - SM_b20824 0.43 +0.6 614,535 - SM_b20824 0.43 +1.4 614,613 + SM_b20824 0.47 -2.9 614,634 + SM_b20824 0.48 +0.3 614,634 + SM_b20824 0.48 -0.1 614,634 + SM_b20824 0.48 +0.5 614,635 - SM_b20824 0.48 +0.5 614,636 + SM_b20824 0.48 +0.4 614,637 - SM_b20824 0.48 -1.4 614,637 - SM_b20824 0.48 -0.7 614,762 + SM_b20824 0.53 +0.9 614,762 + SM_b20824 0.53 +1.7 614,762 + SM_b20824 0.53 -0.3 614,762 + SM_b20824 0.53 -1.1 614,762 + SM_b20824 0.53 +0.3 614,762 + SM_b20824 0.53 -0.2 614,763 - SM_b20824 0.53 -1.3 614,763 - SM_b20824 0.53 +0.1 614,763 - SM_b20824 0.53 +1.0 614,763 - SM_b20824 0.53 +0.0 614,763 - SM_b20824 0.53 +2.9 614,766 - SM_b20824 0.53 -0.2 614,766 - SM_b20824 0.53 +1.1 614,858 + SM_b20824 0.57 -0.8 615,096 + SM_b20824 0.67 -0.5 615,096 + SM_b20824 0.67 -0.0 615,097 - SM_b20824 0.67 +0.1 615,099 - SM_b20824 0.67 +0.0 615,162 - SM_b20824 0.70 -0.1 615,263 + SM_b20824 0.74 -1.8 615,264 - SM_b20824 0.75 +0.1 615,264 - SM_b20824 0.75 +2.5 615,264 - SM_b20824 0.75 -0.7 615,303 + SM_b20824 0.76 +0.1 615,304 - SM_b20824 0.76 -0.8 615,522 - SM_b20824 0.86 -1.0 615,522 - SM_b20824 0.86 +0.6 615,548 + SM_b20824 0.87 -1.0 615,571 + SM_b20824 0.88 -1.8 615,571 + SM_b20824 0.88 +0.3 615,571 + SM_b20824 0.88 -1.9 615,572 - SM_b20824 0.88 -1.5 615,572 - SM_b20824 0.88 +0.6 615,572 - SM_b20824 0.88 +0.3 615,644 + -1.5 615,644 + +0.1 615,645 - -0.2 615,647 + -1.2 615,647 + -0.2 615,648 - -0.2 615,721 + -0.2 615,721 + -1.0 615,721 + -1.3 615,721 + +0.1 615,721 + +1.1 615,721 + -1.1 615,721 + -4.0 615,722 - +0.7 615,794 - +1.4 615,872 + -3.1 615,872 + -0.9 615,873 - -0.4 615,893 + -0.2 615,894 - -0.6 615,956 + +1.7 615,971 - +1.3 616,036 + -1.1 616,037 - +0.1 616,037 - -2.7 616,037 - -1.5 616,037 - -2.2 616,037 - -0.2 616,058 + +1.0 616,058 + -0.4 616,059 - -2.2 616,059 - +0.7 616,059 - -0.5 616,059 - -0.1 616,070 + -1.2 616,070 + +0.7 616,071 - +0.1 616,071 - +0.0 616,071 - -0.0 616,088 + -0.1 616,089 - -0.3 616,139 + SM_b20825 0.15 -1.1 616,140 - +1.3 616,191 + SM_b20825 0.22 -0.1 616,192 - SM_b20825 0.22 +0.9 616,290 - SM_b20825 0.35 +2.4 616,296 - SM_b20825 0.35 -0.2 616,296 - SM_b20825 0.35 +0.3 616,478 + SM_b20825 0.59 -0.9 616,479 - SM_b20825 0.59 +1.1 616,479 - SM_b20825 0.59 +0.7 616,535 + SM_b20825 0.66 +1.3 616,536 - SM_b20825 0.67 -0.3 616,554 + SM_b20825 0.69 +1.5 616,554 + SM_b20825 0.69 -2.0 616,555 - SM_b20825 0.69 -1.1 616,555 - SM_b20825 0.69 +0.1 616,697 + SM_b20825 0.87 -2.5 616,698 - SM_b20825 0.88 -1.8 616,740 + -0.3 616,763 + +0.1 616,858 + -2.7
Or see this region's nucleotide sequence