Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20821 and SM_b20822 are separated by 244 nucleotides SM_b20822 and SM_b20823 are separated by 9 nucleotides
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
SM_b20822: SM_b20822 - cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833, at 611,046 to 611,870
_b20822
SM_b20823: SM_b20823 - cell surface saccharide synthesis protein, at 611,880 to 612,911
_b20823
Position (kb) 611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821 at 610.924 kb on + strand at 610.925 kb on - strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.078 kb on - strand at 611.078 kb on - strand at 611.181 kb on + strand, within SM_b20822 at 611.182 kb on - strand, within SM_b20822 at 611.316 kb on + strand, within SM_b20822 at 611.376 kb on + strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.381 kb on + strand, within SM_b20822 at 611.471 kb on + strand, within SM_b20822 at 611.598 kb on + strand, within SM_b20822 at 611.782 kb on - strand, within SM_b20822 at 611.882 kb on - strand at 611.882 kb on - strand at 611.882 kb on - strand at 611.977 kb on + strand at 611.981 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.986 kb on + strand, within SM_b20823 at 611.986 kb on + strand, within SM_b20823 at 612.141 kb on - strand, within SM_b20823 at 612.148 kb on + strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.280 kb on + strand, within SM_b20823 at 612.461 kb on - strand, within SM_b20823 at 612.468 kb on - strand, within SM_b20823 at 612.541 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.593 kb on + strand, within SM_b20823 at 612.594 kb on - strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.677 kb on - strand, within SM_b20823 at 612.681 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.859 kb on - strand at 612.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 610,229 + SM_b20821 0.28 -2.4 610,229 + SM_b20821 0.28 +0.4 610,230 - SM_b20821 0.29 -0.4 610,568 + SM_b20821 0.71 -0.8 610,568 + SM_b20821 0.71 +2.8 610,568 + SM_b20821 0.71 -0.7 610,610 + SM_b20821 0.76 -0.2 610,611 - SM_b20821 0.76 +0.7 610,631 + SM_b20821 0.79 -0.9 610,631 + SM_b20821 0.79 -4.4 610,653 - SM_b20821 0.81 +0.3 610,924 + -1.1 610,925 - +0.3 611,077 + -1.3 611,077 + +0.3 611,077 + +3.3 611,077 + -0.3 611,077 + +0.2 611,078 - +0.6 611,078 - +0.5 611,181 + SM_b20822 0.16 -1.3 611,182 - SM_b20822 0.16 -1.0 611,316 + SM_b20822 0.33 -2.0 611,376 + SM_b20822 0.40 -0.9 611,377 - SM_b20822 0.40 -0.6 611,377 - SM_b20822 0.40 -4.0 611,381 + SM_b20822 0.41 -2.3 611,471 + SM_b20822 0.52 -1.4 611,598 + SM_b20822 0.67 -1.5 611,782 - SM_b20822 0.89 -1.1 611,882 - +0.9 611,882 - +0.3 611,882 - +0.3 611,977 + -1.3 611,981 + -0.7 611,982 + +0.1 611,982 + +3.3 611,982 + +0.6 611,982 + -2.4 611,982 + -0.7 611,982 + -0.5 611,982 + -0.0 611,982 + -0.7 611,982 + -0.3 611,983 - -1.4 611,983 - -1.0 611,983 - +0.1 611,983 - -2.5 611,983 - +0.6 611,983 - -1.8 611,983 - -0.5 611,983 - -0.7 611,983 - -2.9 611,983 - -0.3 611,986 + SM_b20823 0.10 -0.8 611,986 + SM_b20823 0.10 +1.3 612,141 - SM_b20823 0.25 +0.9 612,148 + SM_b20823 0.26 +2.0 612,149 - SM_b20823 0.26 +1.0 612,149 - SM_b20823 0.26 +1.8 612,149 - SM_b20823 0.26 -0.5 612,149 - SM_b20823 0.26 -0.5 612,280 + SM_b20823 0.39 +0.5 612,461 - SM_b20823 0.56 -1.7 612,468 - SM_b20823 0.57 +1.7 612,541 + SM_b20823 0.64 -1.8 612,549 + SM_b20823 0.65 -0.2 612,549 + SM_b20823 0.65 -0.3 612,549 + SM_b20823 0.65 -0.1 612,549 + SM_b20823 0.65 -0.6 612,549 + SM_b20823 0.65 -0.4 612,589 + SM_b20823 0.69 -1.7 612,589 + SM_b20823 0.69 +2.0 612,590 - SM_b20823 0.69 -2.1 612,590 - SM_b20823 0.69 -0.7 612,593 + SM_b20823 0.69 -0.8 612,594 - SM_b20823 0.69 -0.0 612,676 + SM_b20823 0.77 -0.3 612,676 + SM_b20823 0.77 +0.4 612,676 + SM_b20823 0.77 -2.3 612,677 - SM_b20823 0.77 -0.7 612,681 - SM_b20823 0.78 -0.8 612,772 - SM_b20823 0.86 -2.1 612,772 - SM_b20823 0.86 -0.5 612,859 - -1.5 612,859 - -1.8
Or see this region's nucleotide sequence