Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20613 and SM_b20614 are separated by 124 nucleotides SM_b20614 and SM_b20615 are separated by 376 nucleotides
SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385
_b20613
SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567
_b20614
SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779
_b20615
Position (kb)
1631
1632
1633
1634 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1630.909 kb on + strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.910 kb on - strand, within SM_b20613 at 1630.912 kb on + strand, within SM_b20613 at 1631.057 kb on - strand, within SM_b20613 at 1631.203 kb on + strand, within SM_b20613 at 1631.204 kb on - strand, within SM_b20613 at 1631.335 kb on + strand at 1631.336 kb on - strand at 1631.336 kb on - strand at 1631.427 kb on - strand at 1631.511 kb on + strand at 1631.511 kb on + strand at 1631.779 kb on - strand, within SM_b20614 at 1631.779 kb on - strand, within SM_b20614 at 1631.960 kb on - strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.112 kb on + strand, within SM_b20614 at 1632.408 kb on + strand, within SM_b20614 at 1632.409 kb on - strand, within SM_b20614 at 1632.545 kb on - strand, within SM_b20614 at 1632.545 kb on - strand, within SM_b20614 at 1632.609 kb on + strand, within SM_b20614 at 1632.609 kb on + strand, within SM_b20614 at 1632.610 kb on - strand, within SM_b20614 at 1632.733 kb on - strand, within SM_b20614 at 1632.789 kb on + strand, within SM_b20614 at 1632.789 kb on + strand, within SM_b20614 at 1632.790 kb on - strand, within SM_b20614 at 1632.790 kb on - strand, within SM_b20614 at 1632.790 kb on - strand, within SM_b20614 at 1632.832 kb on + strand, within SM_b20614 at 1632.833 kb on - strand, within SM_b20614 at 1632.834 kb on + strand, within SM_b20614 at 1632.834 kb on + strand, within SM_b20614 at 1632.835 kb on - strand, within SM_b20614 at 1632.850 kb on - strand, within SM_b20614 at 1633.168 kb on - strand, within SM_b20614 at 1633.235 kb on + strand, within SM_b20614 at 1633.235 kb on + strand, within SM_b20614 at 1633.236 kb on - strand, within SM_b20614 at 1633.264 kb on + strand, within SM_b20614 at 1633.417 kb on + strand at 1633.418 kb on + strand at 1633.419 kb on - strand at 1633.432 kb on - strand at 1633.432 kb on - strand at 1633.460 kb on + strand at 1633.583 kb on - strand at 1633.727 kb on + strand at 1633.727 kb on + strand at 1633.728 kb on - strand at 1633.770 kb on + strand at 1633.771 kb on - strand at 1633.822 kb on + strand at 1633.951 kb on + strand at 1634.017 kb on - strand at 1634.017 kb on - strand at 1634.017 kb on - strand at 1634.215 kb on - strand, within SM_b20615 at 1634.341 kb on - strand, within SM_b20615
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,630,909 + SM_b20613 0.66 +1.0 1,630,909 + SM_b20613 0.66 +1.2 1,630,910 - SM_b20613 0.66 +0.9 1,630,912 + SM_b20613 0.66 +0.8 1,631,057 - SM_b20613 0.76 +0.8 1,631,203 + SM_b20613 0.87 -0.6 1,631,204 - SM_b20613 0.87 +1.3 1,631,335 + +1.4 1,631,336 - +1.7 1,631,336 - -0.6 1,631,427 - -1.1 1,631,511 + -0.2 1,631,511 + +0.2 1,631,779 - SM_b20614 0.13 -0.7 1,631,779 - SM_b20614 0.13 -1.2 1,631,960 - SM_b20614 0.22 -0.9 1,632,073 + SM_b20614 0.27 +0.4 1,632,073 + SM_b20614 0.27 -1.2 1,632,073 + SM_b20614 0.27 -0.1 1,632,073 + SM_b20614 0.27 -1.8 1,632,073 + SM_b20614 0.27 +0.2 1,632,073 + SM_b20614 0.27 +0.2 1,632,074 - SM_b20614 0.27 -0.5 1,632,074 - SM_b20614 0.27 +0.1 1,632,112 + SM_b20614 0.29 -0.2 1,632,408 + SM_b20614 0.44 +0.1 1,632,409 - SM_b20614 0.44 +0.7 1,632,545 - SM_b20614 0.50 +2.2 1,632,545 - SM_b20614 0.50 -1.2 1,632,609 + SM_b20614 0.53 -0.6 1,632,609 + SM_b20614 0.53 +0.6 1,632,610 - SM_b20614 0.53 +0.3 1,632,733 - SM_b20614 0.59 +0.3 1,632,789 + SM_b20614 0.62 +0.2 1,632,789 + SM_b20614 0.62 +0.4 1,632,790 - SM_b20614 0.62 +1.0 1,632,790 - SM_b20614 0.62 +0.2 1,632,790 - SM_b20614 0.62 -1.0 1,632,832 + SM_b20614 0.64 -1.9 1,632,833 - SM_b20614 0.64 -1.0 1,632,834 + SM_b20614 0.64 -1.0 1,632,834 + SM_b20614 0.64 -1.4 1,632,835 - SM_b20614 0.64 +0.0 1,632,850 - SM_b20614 0.65 -0.1 1,633,168 - SM_b20614 0.81 +0.5 1,633,235 + SM_b20614 0.84 -1.4 1,633,235 + SM_b20614 0.84 -1.5 1,633,236 - SM_b20614 0.84 -1.4 1,633,264 + SM_b20614 0.85 -0.0 1,633,417 + -0.3 1,633,418 + +1.0 1,633,419 - +3.4 1,633,432 - -0.9 1,633,432 - -0.2 1,633,460 + +1.5 1,633,583 - +0.4 1,633,727 + -0.2 1,633,727 + -0.8 1,633,728 - -1.9 1,633,770 + +0.0 1,633,771 - -0.7 1,633,822 + +1.0 1,633,951 + -0.3 1,634,017 - -0.6 1,634,017 - -1.8 1,634,017 - -0.1 1,634,215 - SM_b20615 0.15 -0.9 1,634,341 - SM_b20615 0.22 -0.7
Or see this region's nucleotide sequence