Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20605 and SM_b20606 are separated by 212 nucleotides SM_b20606 and SM_b20607 overlap by 4 nucleotides SM_b20607 and SM_b20608 are separated by 32 nucleotides SM_b20608 and SM_b20609 are separated by 306 nucleotides
SM_b20605: SM_b20605 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,619,075 to 1,620,367
_b20605
SM_b20606: SM_b20606 - hypothetical protein, at 1,620,580 to 1,621,029
_b20606
SM_b20607: SM_b20607 - hypothetical protein, at 1,621,026 to 1,621,490
_b20607
SM_b20608: SM_b20608 - ArsR family transcriptional regulator, at 1,621,523 to 1,621,861
_b20608
SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548
_b20609
Position (kb)
1621
1622 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1620.153 kb on - strand, within SM_b20605 at 1620.316 kb on + strand at 1620.362 kb on - strand at 1620.465 kb on + strand at 1620.466 kb on - strand at 1620.466 kb on - strand at 1620.476 kb on - strand at 1620.480 kb on - strand at 1620.588 kb on - strand at 1620.639 kb on - strand, within SM_b20606 at 1621.016 kb on + strand at 1621.016 kb on + strand at 1621.057 kb on + strand at 1621.058 kb on - strand at 1621.059 kb on - strand at 1621.262 kb on - strand, within SM_b20607 at 1621.262 kb on - strand, within SM_b20607 at 1621.279 kb on + strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.280 kb on - strand, within SM_b20607 at 1621.454 kb on + strand at 1621.454 kb on + strand at 1621.455 kb on - strand at 1621.455 kb on - strand at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.566 kb on + strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.567 kb on - strand, within SM_b20608 at 1621.608 kb on + strand, within SM_b20608 at 1621.713 kb on - strand, within SM_b20608 at 1622.115 kb on + strand at 1622.115 kb on + strand at 1622.207 kb on + strand at 1622.208 kb on - strand at 1622.208 kb on - strand at 1622.209 kb on + strand at 1622.210 kb on - strand at 1622.243 kb on + strand at 1622.244 kb on - strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.356 kb on + strand at 1622.357 kb on - strand at 1622.367 kb on - strand at 1622.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 1,620,153 - SM_b20605 0.83 -0.8 1,620,316 + -0.0 1,620,362 - -1.0 1,620,465 + +0.2 1,620,466 - -0.1 1,620,466 - -0.2 1,620,476 - -0.1 1,620,480 - +0.2 1,620,588 - +0.2 1,620,639 - SM_b20606 0.13 -0.2 1,621,016 + -0.3 1,621,016 + +0.6 1,621,057 + +0.1 1,621,058 - -1.5 1,621,059 - +1.2 1,621,262 - SM_b20607 0.51 +0.0 1,621,262 - SM_b20607 0.51 +0.2 1,621,279 + SM_b20607 0.54 +0.6 1,621,280 - SM_b20607 0.55 +0.8 1,621,280 - SM_b20607 0.55 +0.3 1,621,454 + -0.1 1,621,454 + -0.3 1,621,455 - -0.9 1,621,455 - +0.0 1,621,566 + SM_b20608 0.13 -0.0 1,621,566 + SM_b20608 0.13 +0.4 1,621,566 + SM_b20608 0.13 -1.9 1,621,566 + SM_b20608 0.13 +0.0 1,621,567 - SM_b20608 0.13 +0.3 1,621,567 - SM_b20608 0.13 -0.9 1,621,608 + SM_b20608 0.25 -0.4 1,621,713 - SM_b20608 0.56 -2.8 1,622,115 + -1.2 1,622,115 + +0.5 1,622,207 + -0.3 1,622,208 - +0.4 1,622,208 - +0.2 1,622,209 + +0.0 1,622,210 - -0.6 1,622,243 + -1.4 1,622,244 - +0.5 1,622,356 + -0.5 1,622,356 + -0.3 1,622,356 + -3.0 1,622,357 - -0.2 1,622,367 - +0.1 1,622,444 + -1.1
Or see this region's nucleotide sequence