Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20600

Experiment: Paraquat dichloride 0.3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20599 and SM_b20600 are separated by 62 nucleotidesSM_b20600 and SM_b21707 are separated by 171 nucleotidesSM_b21707 and SM_b20602 are separated by 18 nucleotides SM_b20599: SM_b20599 - smb01f11-replication protein, at 1,612,756 to 1,613,817 _b20599 SM_b20600: SM_b20600 - hypothetical protein, at 1,613,880 to 1,614,503 _b20600 SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370 _b21707 SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141 _b20602 Position (kb) 1613 1614 1615Strain fitness (log2 ratio) -3 -2 -1 0 1at 1613.816 kb on - strandat 1613.883 kb on + strandat 1614.099 kb on + strand, within SM_b20600at 1614.100 kb on - strand, within SM_b20600at 1614.227 kb on - strand, within SM_b20600at 1614.264 kb on - strand, within SM_b20600at 1614.310 kb on - strand, within SM_b20600at 1614.450 kb on + strandat 1614.685 kb on - strandat 1614.759 kb on - strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.760 kb on + strand, within SM_b21707at 1614.761 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.797 kb on - strand, within SM_b21707at 1614.842 kb on - strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.026 kb on + strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strandat 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.027 kb on - strand, within SM_b21707at 1615.028 kb on + strand, within SM_b21707at 1615.028 kb on + strand, within SM_b21707at 1615.029 kb on - strand, within SM_b21707at 1615.029 kb on - strand, within SM_b21707at 1615.132 kb on + strand, within SM_b21707at 1615.340 kb on - strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.402 kb on + strandat 1615.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml
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1,613,816 - -1.2
1,613,883 + +1.3
1,614,099 + SM_b20600 0.35 -1.4
1,614,100 - SM_b20600 0.35 -0.5
1,614,227 - SM_b20600 0.56 -2.1
1,614,264 - SM_b20600 0.62 -0.4
1,614,310 - SM_b20600 0.69 -0.3
1,614,450 + -1.4
1,614,685 - +0.5
1,614,759 - SM_b21707 0.12 +0.6
1,614,760 + SM_b21707 0.12 -1.8
1,614,760 + SM_b21707 0.12 -0.6
1,614,760 + SM_b21707 0.12 -3.1
1,614,760 + SM_b21707 0.12 +0.3
1,614,760 + SM_b21707 0.12 -0.9
1,614,761 - SM_b21707 0.12 +0.1
1,614,797 - SM_b21707 0.18 -0.3
1,614,797 - SM_b21707 0.18 -2.2
1,614,797 - SM_b21707 0.18 +0.4
1,614,842 - SM_b21707 0.24 -0.4
1,615,026 + SM_b21707 0.50 +0.4
1,615,026 + SM_b21707 0.50 -0.3
1,615,026 + SM_b21707 0.50 +0.5
1,615,026 + SM_b21707 0.50 +0.5
1,615,027 - SM_b21707 0.51 +0.7
1,615,027 - -0.2
1,615,027 - SM_b21707 0.51 -0.1
1,615,027 - SM_b21707 0.51 -0.0
1,615,027 - SM_b21707 0.51 -0.2
1,615,027 - SM_b21707 0.51 -1.2
1,615,027 - SM_b21707 0.51 +0.9
1,615,027 - SM_b21707 0.51 -0.0
1,615,027 - SM_b21707 0.51 -1.0
1,615,028 + SM_b21707 0.51 -0.1
1,615,028 + SM_b21707 0.51 -0.3
1,615,029 - SM_b21707 0.51 -0.9
1,615,029 - SM_b21707 0.51 -0.3
1,615,132 + SM_b21707 0.66 -2.2
1,615,340 - +0.6
1,615,402 + +0.8
1,615,402 + -1.5
1,615,402 + -0.9
1,615,402 + -0.1
1,615,402 + -0.0
1,615,403 - +0.9

Or see this region's nucleotide sequence