Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20553 and SM_b20554 are separated by 357 nucleotides SM_b20554 and SM_b20555 are separated by 3 nucleotides SM_b20555 and SM_b20556 are separated by 456 nucleotides
SM_b20553: SM_b20553 - hypothetical protein, at 578,902 to 579,096
_b20553
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
SM_b20555: SM_b20555 - hypothetical protein, at 579,967 to 580,188
_b20555
SM_b20556: SM_b20556 - hypothetical protein, at 580,645 to 581,325
_b20556
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.981 kb on + strand, within SM_b20553 at 579.010 kb on - strand, within SM_b20553 at 579.056 kb on + strand, within SM_b20553 at 579.091 kb on + strand at 579.091 kb on + strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.218 kb on - strand at 579.219 kb on + strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.248 kb on + strand at 579.249 kb on - strand at 579.256 kb on - strand at 579.256 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.298 kb on - strand at 579.298 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.467 kb on + strand at 579.497 kb on + strand at 579.497 kb on + strand at 579.498 kb on - strand at 579.509 kb on - strand, within SM_b20554 at 579.509 kb on - strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.627 kb on + strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.696 kb on - strand, within SM_b20554 at 579.912 kb on + strand, within SM_b20554 at 579.913 kb on - strand at 579.913 kb on - strand at 580.072 kb on + strand, within SM_b20555 at 580.073 kb on - strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.227 kb on + strand at 580.227 kb on + strand at 580.228 kb on - strand at 580.228 kb on - strand at 580.262 kb on - strand at 580.348 kb on + strand at 580.349 kb on - strand at 580.385 kb on + strand at 580.539 kb on + strand at 580.555 kb on - strand at 580.650 kb on + strand at 580.650 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.746 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.978 kb on + strand, within SM_b20556 at 580.991 kb on + strand, within SM_b20556 at 580.992 kb on - strand, within SM_b20556 at 580.996 kb on - strand, within SM_b20556 at 581.043 kb on + strand, within SM_b20556 at 581.062 kb on + strand, within SM_b20556 at 581.077 kb on + strand, within SM_b20556 at 581.077 kb on + strand, within SM_b20556 at 581.079 kb on + strand, within SM_b20556 at 581.080 kb on - strand, within SM_b20556 at 581.080 kb on - strand, within SM_b20556 at 581.107 kb on + strand, within SM_b20556 at 581.108 kb on - strand, within SM_b20556 at 581.119 kb on - strand, within SM_b20556 at 581.149 kb on + strand, within SM_b20556 at 581.150 kb on - strand, within SM_b20556
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 578,981 + SM_b20553 0.41 +1.2 579,010 - SM_b20553 0.55 -0.6 579,056 + SM_b20553 0.79 +1.2 579,091 + -0.7 579,091 + +0.3 579,092 - -3.3 579,092 - +1.3 579,092 - -2.1 579,106 + -0.2 579,106 + -0.1 579,217 + +1.8 579,217 + +0.8 579,217 + +0.7 579,218 - -1.5 579,219 + +0.1 579,220 - -0.3 579,220 - -0.4 579,220 - -1.4 579,220 - +2.9 579,248 + -0.7 579,249 - +0.3 579,256 - -0.7 579,256 - +0.5 579,291 - +0.0 579,291 - -0.5 579,291 - +0.2 579,291 - +0.7 579,291 - -0.4 579,297 + +0.3 579,297 + -0.4 579,297 + +0.4 579,297 + +1.3 579,298 - +0.5 579,298 - -0.1 579,436 + -0.3 579,437 - -0.7 579,467 + -1.7 579,497 + +1.9 579,497 + +0.3 579,498 - +0.2 579,509 - SM_b20554 0.11 -0.3 579,509 - SM_b20554 0.11 -0.0 579,619 + SM_b20554 0.32 -1.3 579,619 + SM_b20554 0.32 +0.7 579,619 + -0.2 579,620 - SM_b20554 0.33 -0.4 579,620 - SM_b20554 0.33 +0.3 579,620 - SM_b20554 0.33 +0.2 579,627 + SM_b20554 0.34 -0.7 579,628 - SM_b20554 0.34 -0.2 579,628 - SM_b20554 0.34 +1.2 579,696 - SM_b20554 0.47 -0.6 579,912 + SM_b20554 0.90 +0.9 579,913 - +2.2 579,913 - +0.6 580,072 + SM_b20555 0.47 -1.2 580,073 - SM_b20555 0.48 -1.6 580,077 + SM_b20555 0.50 -0.8 580,077 + SM_b20555 0.50 -0.9 580,078 - SM_b20555 0.50 +0.3 580,078 - SM_b20555 0.50 +0.3 580,227 + +0.7 580,227 + -2.3 580,228 - +1.4 580,228 - -0.8 580,262 - +0.6 580,348 + +1.3 580,349 - -0.2 580,385 + +1.3 580,539 + +0.2 580,555 - +0.1 580,650 + +0.1 580,650 + -0.6 580,683 + -1.0 580,683 + -0.4 580,683 + +0.8 580,746 + SM_b20556 0.15 +0.5 580,978 + SM_b20556 0.49 -0.5 580,978 + SM_b20556 0.49 +1.3 580,978 + SM_b20556 0.49 -0.6 580,991 + SM_b20556 0.51 -0.1 580,992 - SM_b20556 0.51 -0.2 580,996 - SM_b20556 0.52 +1.1 581,043 + SM_b20556 0.58 -2.9 581,062 + SM_b20556 0.61 +1.3 581,077 + SM_b20556 0.63 +0.2 581,077 + SM_b20556 0.63 +0.6 581,079 + SM_b20556 0.64 +0.3 581,080 - SM_b20556 0.64 +0.7 581,080 - SM_b20556 0.64 -0.4 581,107 + SM_b20556 0.68 -0.0 581,108 - SM_b20556 0.68 +0.4 581,119 - SM_b20556 0.70 -1.3 581,149 + SM_b20556 0.74 +0.4 581,150 - SM_b20556 0.74 -0.1
Or see this region's nucleotide sequence