Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20515 and SM_b20516 are separated by 67 nucleotides SM_b20516 and SM_b20517 are separated by 750 nucleotides
SM_b20515: SM_b20515 - chemotaxis methyltransferase, at 537,727 to 541,212
_b20515
SM_b20516: SM_b20516 - response regulator protein, at 541,280 to 541,606
_b20516
SM_b20517: SM_b20517 - hypothetical protein, at 542,357 to 542,647
_b20517
Position (kb) 541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.327 kb on - strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.358 kb on + strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.359 kb on - strand, within SM_b20515 at 540.522 kb on - strand, within SM_b20515 at 540.838 kb on + strand, within SM_b20515 at 540.907 kb on - strand at 541.032 kb on + strand at 541.123 kb on - strand at 541.123 kb on - strand at 541.123 kb on - strand at 541.463 kb on + strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.464 kb on - strand, within SM_b20516 at 541.466 kb on - strand, within SM_b20516 at 541.573 kb on + strand, within SM_b20516 at 541.573 kb on + strand, within SM_b20516 at 541.574 kb on - strand at 541.604 kb on + strand at 541.675 kb on + strand at 541.677 kb on - strand at 541.715 kb on + strand at 541.972 kb on - strand at 542.140 kb on + strand at 542.141 kb on - strand at 542.215 kb on - strand at 542.215 kb on - strand at 542.308 kb on + strand at 542.309 kb on - strand at 542.321 kb on + strand at 542.322 kb on - strand at 542.358 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 540,327 - SM_b20515 0.75 +0.0 540,327 - SM_b20515 0.75 -0.2 540,327 - SM_b20515 0.75 -0.6 540,327 - SM_b20515 0.75 +0.2 540,358 + SM_b20515 0.75 -2.0 540,358 + SM_b20515 0.75 -0.3 540,358 + SM_b20515 0.75 -0.1 540,359 - SM_b20515 0.76 -1.0 540,359 - SM_b20515 0.76 -0.5 540,359 - SM_b20515 0.76 -0.0 540,359 - SM_b20515 0.76 -2.2 540,359 - SM_b20515 0.76 -1.6 540,522 - SM_b20515 0.80 +0.3 540,838 + SM_b20515 0.89 -0.4 540,907 - +0.5 541,032 + +0.1 541,123 - +0.1 541,123 - -0.5 541,123 - -0.4 541,463 + SM_b20516 0.56 +0.0 541,464 - SM_b20516 0.56 -1.5 541,464 - SM_b20516 0.56 -1.0 541,464 - SM_b20516 0.56 -1.0 541,466 - SM_b20516 0.57 -1.0 541,573 + SM_b20516 0.90 -3.3 541,573 + SM_b20516 0.90 -0.9 541,574 - +1.0 541,604 + -0.7 541,675 + -0.0 541,677 - -1.4 541,715 + +1.7 541,972 - -1.1 542,140 + -0.2 542,141 - +0.4 542,215 - +0.6 542,215 - +1.1 542,308 + +1.1 542,309 - -1.6 542,321 + +1.7 542,322 - -0.2 542,358 + +0.0 542,369 + -1.8 542,369 + -0.1 542,369 + +0.4
Or see this region's nucleotide sequence