Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20442 and SM_b20443 are separated by 67 nucleotides SM_b20443 and SM_b20444 are separated by 5 nucleotides SM_b20444 and SM_b20445 overlap by 1 nucleotides
SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261
_b20442
SM_b20443: SM_b20443 - permease, at 454,329 to 454,901
_b20443
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 453.962 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 454.416 kb on + strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.495 kb on - strand, within SM_b20443 at 454.513 kb on - strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand at 454.617 kb on + strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.624 kb on - strand, within SM_b20443 at 454.693 kb on - strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.753 kb on + strand, within SM_b20443 at 454.779 kb on + strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.854 kb on + strand at 454.935 kb on + strand at 454.936 kb on - strand at 454.936 kb on - strand at 454.991 kb on + strand at 455.003 kb on + strand at 455.004 kb on - strand at 455.135 kb on + strand, within SM_b20444 at 455.136 kb on - strand, within SM_b20444 at 455.376 kb on - strand, within SM_b20444 at 455.481 kb on - strand, within SM_b20444 at 455.579 kb on + strand, within SM_b20444 at 455.580 kb on - strand, within SM_b20444 at 455.732 kb on - strand, within SM_b20444 at 456.238 kb on + strand at 456.239 kb on - strand at 456.239 kb on - strand at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 453,962 - SM_b20442 0.69 -0.7 453,962 - SM_b20442 0.69 +0.2 454,416 + SM_b20443 0.15 +0.5 454,417 - SM_b20443 0.15 +1.1 454,417 - SM_b20443 0.15 -1.0 454,495 - SM_b20443 0.29 -0.1 454,513 - SM_b20443 0.32 -0.6 454,617 + SM_b20443 0.50 -0.4 454,617 + SM_b20443 0.50 -0.0 454,617 + -0.6 454,617 + SM_b20443 0.50 -0.0 454,618 - SM_b20443 0.50 -2.5 454,618 - SM_b20443 0.50 -0.6 454,618 - SM_b20443 0.50 -0.2 454,618 - SM_b20443 0.50 +0.4 454,618 - SM_b20443 0.50 -0.0 454,624 - SM_b20443 0.51 -0.5 454,693 - SM_b20443 0.64 +0.6 454,716 + SM_b20443 0.68 -0.4 454,716 + SM_b20443 0.68 -1.0 454,753 + SM_b20443 0.74 +1.8 454,779 + SM_b20443 0.79 +0.1 454,780 - SM_b20443 0.79 +0.0 454,780 - SM_b20443 0.79 +0.4 454,854 + +0.2 454,935 + -0.3 454,936 - -1.0 454,936 - -0.9 454,991 + -0.5 455,003 + -0.5 455,004 - -0.5 455,135 + SM_b20444 0.16 +0.5 455,136 - SM_b20444 0.16 +0.7 455,376 - SM_b20444 0.33 +0.9 455,481 - SM_b20444 0.41 +1.9 455,579 + SM_b20444 0.48 -1.4 455,580 - SM_b20444 0.48 +0.1 455,732 - SM_b20444 0.59 +0.6 456,238 + +1.3 456,239 - -0.3 456,239 - -1.6 456,461 - SM_b20445 0.14 -1.4 456,461 - SM_b20445 0.14 +0.2 456,461 - SM_b20445 0.14 -0.2 456,463 + SM_b20445 0.14 +0.2 456,509 + SM_b20445 0.19 -1.7 456,702 + SM_b20445 0.37 +0.0 456,702 + SM_b20445 0.37 +0.7 456,702 + SM_b20445 0.37 +0.1 456,702 + SM_b20445 0.37 -1.6 456,702 + SM_b20445 0.37 +0.4 456,848 + SM_b20445 0.51 -1.7 456,849 - SM_b20445 0.51 -1.0 457,021 + SM_b20445 0.67 -0.8 457,021 + SM_b20445 0.67 -1.6 457,082 + SM_b20445 0.73 -0.7 457,149 + SM_b20445 0.79 +0.1 457,150 - SM_b20445 0.79 +1.4
Or see this region's nucleotide sequence