Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20381 and SM_b20382 overlap by 4 nucleotides SM_b20382 and SM_b20383 are separated by 125 nucleotides SM_b20383 and SM_b20384 are separated by 105 nucleotides
SM_b20381: SM_b20381 - ABC transporter permease, at 392,436 to 393,266
_b20381
SM_b20382: SM_b20382 - ABC transporter permease, at 393,263 to 394,114
_b20382
SM_b20383: SM_b20383 - ABC transporter substrate-binding protein, at 394,240 to 395,313
_b20383
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
Position (kb) 394
395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 393.312 kb on + strand at 393.312 kb on + strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.313 kb on - strand at 393.404 kb on + strand, within SM_b20382 at 393.404 kb on + strand, within SM_b20382 at 393.405 kb on - strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.459 kb on + strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.460 kb on - strand, within SM_b20382 at 393.528 kb on + strand, within SM_b20382 at 393.585 kb on + strand at 393.585 kb on + strand, within SM_b20382 at 393.585 kb on + strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.586 kb on - strand, within SM_b20382 at 393.641 kb on - strand, within SM_b20382 at 393.768 kb on + strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.769 kb on - strand, within SM_b20382 at 393.783 kb on + strand, within SM_b20382 at 393.784 kb on - strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 393.924 kb on + strand, within SM_b20382 at 394.014 kb on + strand, within SM_b20382 at 394.015 kb on - strand, within SM_b20382 at 394.196 kb on + strand at 394.241 kb on + strand at 394.241 kb on + strand at 394.563 kb on + strand, within SM_b20383 at 394.564 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.722 kb on - strand, within SM_b20383 at 394.877 kb on + strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 394.878 kb on - strand, within SM_b20383 at 395.104 kb on + strand, within SM_b20383 at 395.105 kb on - strand, within SM_b20383 at 395.219 kb on + strand at 395.219 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.352 kb on + strand at 395.353 kb on - strand at 395.353 kb on - strand at 395.531 kb on - strand, within SM_b20384 at 395.531 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.601 kb on - strand, within SM_b20384 at 395.771 kb on - strand, within SM_b20384 at 395.844 kb on + strand, within SM_b20384 at 395.850 kb on + strand, within SM_b20384 at 396.146 kb on + strand, within SM_b20384
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 393,312 + -0.1 393,312 + +0.3 393,313 - -0.3 393,313 - +0.3 393,313 - +0.4 393,404 + SM_b20382 0.17 +1.4 393,404 + SM_b20382 0.17 -1.4 393,405 - SM_b20382 0.17 -1.6 393,459 + SM_b20382 0.23 +0.3 393,459 + SM_b20382 0.23 +0.3 393,459 + SM_b20382 0.23 +0.3 393,459 + SM_b20382 0.23 +0.9 393,460 - SM_b20382 0.23 +0.2 393,460 - SM_b20382 0.23 +0.0 393,528 + SM_b20382 0.31 -2.2 393,585 + +1.4 393,585 + SM_b20382 0.38 +0.6 393,585 + SM_b20382 0.38 -0.7 393,586 - SM_b20382 0.38 +0.8 393,586 - SM_b20382 0.38 -0.2 393,641 - SM_b20382 0.44 +3.4 393,768 + SM_b20382 0.59 +0.0 393,769 - SM_b20382 0.59 +0.0 393,769 - SM_b20382 0.59 -0.8 393,783 + SM_b20382 0.61 +0.3 393,784 - SM_b20382 0.61 +0.8 393,924 + SM_b20382 0.78 -0.9 393,924 + SM_b20382 0.78 +1.4 393,924 + SM_b20382 0.78 -0.1 393,924 + SM_b20382 0.78 +0.0 394,014 + SM_b20382 0.88 +0.2 394,015 - SM_b20382 0.88 +1.0 394,196 + +1.4 394,241 + -0.7 394,241 + -0.1 394,563 + SM_b20383 0.30 -2.2 394,564 - SM_b20383 0.30 -0.9 394,722 - SM_b20383 0.45 +1.6 394,722 - SM_b20383 0.45 -0.2 394,877 + SM_b20383 0.59 -0.5 394,878 - SM_b20383 0.59 +0.2 394,878 - SM_b20383 0.59 -4.4 395,104 + SM_b20383 0.80 +0.8 395,105 - SM_b20383 0.81 -0.4 395,219 + +0.1 395,219 + +0.1 395,352 + -0.3 395,352 + +0.5 395,352 + +0.8 395,353 - -0.2 395,353 - +1.2 395,531 - SM_b20384 0.12 -0.2 395,531 - SM_b20384 0.12 -1.6 395,601 - SM_b20384 0.19 -1.4 395,601 - SM_b20384 0.19 +0.4 395,771 - SM_b20384 0.36 +0.4 395,844 + SM_b20384 0.44 -0.1 395,850 + SM_b20384 0.44 -2.6 396,146 + SM_b20384 0.75 -0.4
Or see this region's nucleotide sequence