Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20369 and SM_b20370 overlap by 4 nucleotides SM_b20370 and SM_b20371 are separated by 44 nucleotides SM_b20371 and SM_b20372 are separated by 23 nucleotides
SM_b20369: SM_b20369 - hypothetical protein, at 381,385 to 382,626
_b20369
SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303
_b20370
SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794
_b20371
SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095
_b20372
Position (kb) 383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.432 kb on + strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.516 kb on + strand at 382.524 kb on - strand at 382.524 kb on - strand at 382.610 kb on + strand at 382.611 kb on - strand at 382.658 kb on + strand at 382.658 kb on + strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.660 kb on + strand at 382.660 kb on + strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.773 kb on + strand, within SM_b20370 at 382.774 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 383.171 kb on - strand, within SM_b20370 at 383.301 kb on + strand at 383.302 kb on - strand at 383.428 kb on - strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.692 kb on - strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.707 kb on - strand, within SM_b20371 at 383.788 kb on + strand at 383.788 kb on + strand at 383.789 kb on - strand at 383.794 kb on + strand at 383.795 kb on - strand at 383.900 kb on + strand at 384.267 kb on + strand, within SM_b20372 at 384.268 kb on - strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.547 kb on + strand, within SM_b20372 at 384.548 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 382,432 + SM_b20369 0.84 -1.0 382,433 - SM_b20369 0.84 +0.9 382,433 - SM_b20369 0.84 +1.1 382,516 + -0.6 382,524 - +1.0 382,524 - +0.3 382,610 + +0.5 382,611 - -2.1 382,658 + +0.1 382,658 + -0.8 382,659 - +0.4 382,659 - -0.2 382,659 - -1.2 382,659 - +1.0 382,660 + -0.3 382,660 + -2.2 382,661 - +0.1 382,661 - +0.5 382,661 - +0.5 382,773 + SM_b20370 0.22 -1.1 382,774 - SM_b20370 0.22 +0.0 382,878 - SM_b20370 0.37 -1.0 382,878 - SM_b20370 0.37 +2.0 383,171 - SM_b20370 0.80 +1.4 383,301 + -0.7 383,302 - +0.1 383,428 - SM_b20371 0.18 -1.2 383,691 + SM_b20371 0.77 +0.3 383,691 + SM_b20371 0.77 +0.8 383,691 + SM_b20371 0.77 -2.0 383,692 - SM_b20371 0.77 -0.6 383,706 + SM_b20371 0.80 +0.2 383,706 + SM_b20371 0.80 -1.6 383,706 + SM_b20371 0.80 -1.4 383,706 + SM_b20371 0.80 +0.5 383,707 - SM_b20371 0.80 -0.5 383,788 + -0.2 383,788 + -0.4 383,789 - +0.4 383,794 + -0.2 383,795 - +0.1 383,900 + +0.0 384,267 + SM_b20372 0.35 +0.7 384,268 - SM_b20372 0.35 +0.1 384,359 + SM_b20372 0.42 -0.5 384,359 + SM_b20372 0.42 -0.6 384,360 - SM_b20372 0.42 +0.1 384,360 - SM_b20372 0.42 +2.3 384,360 - SM_b20372 0.42 +1.4 384,360 - SM_b20372 0.42 -0.9 384,547 + SM_b20372 0.57 -2.8 384,548 - SM_b20372 0.57 +0.5 384,627 - SM_b20372 0.63 +1.8 384,627 - SM_b20372 0.63 -0.3
Or see this region's nucleotide sequence