Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20333 and SM_b20334 are separated by 615 nucleotides SM_b20334 and SM_b20335 are separated by 220 nucleotides
SM_b20333: SM_b20333 - transporter protein, at 336,729 to 338,849
_b20333
SM_b20334: SM_b20334 - hypothetical protein, at 339,465 to 340,376
_b20334
SM_b20335: SM_b20335 - hypothetical protein, at 340,597 to 341,877
_b20335
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.521 kb on - strand, within SM_b20333 at 338.521 kb on - strand, within SM_b20333 at 338.558 kb on - strand, within SM_b20333 at 338.638 kb on - strand at 338.679 kb on + strand at 338.792 kb on + strand at 338.795 kb on + strand at 339.033 kb on + strand at 339.085 kb on + strand at 339.226 kb on + strand at 339.259 kb on + strand at 339.259 kb on + strand at 339.280 kb on + strand at 339.281 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.683 kb on - strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.737 kb on + strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.738 kb on - strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.739 kb on + strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.740 kb on - strand, within SM_b20334 at 339.755 kb on - strand, within SM_b20334 at 339.843 kb on + strand, within SM_b20334 at 339.844 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.862 kb on - strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 339.989 kb on + strand, within SM_b20334 at 340.022 kb on + strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.023 kb on - strand, within SM_b20334 at 340.086 kb on + strand, within SM_b20334 at 340.087 kb on - strand, within SM_b20334 at 340.126 kb on - strand, within SM_b20334 at 340.281 kb on + strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.282 kb on - strand, within SM_b20334 at 340.375 kb on - strand at 340.405 kb on - strand at 340.459 kb on + strand at 340.460 kb on - strand at 340.460 kb on - strand at 340.475 kb on + strand at 340.619 kb on + strand at 340.620 kb on - strand at 340.646 kb on + strand at 340.652 kb on - strand at 341.065 kb on + strand, within SM_b20335 at 341.065 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.127 kb on + strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.128 kb on - strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.169 kb on + strand, within SM_b20335 at 341.170 kb on - strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.173 kb on + strand, within SM_b20335 at 341.195 kb on - strand, within SM_b20335 at 341.277 kb on + strand, within SM_b20335
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 338,521 - SM_b20333 0.84 -0.2 338,521 - SM_b20333 0.84 +0.7 338,558 - SM_b20333 0.86 +0.9 338,638 - +0.5 338,679 + +1.1 338,792 + -1.2 338,795 + +0.3 339,033 + +1.8 339,085 + -1.9 339,226 + -0.7 339,259 + +0.3 339,259 + +0.3 339,280 + +0.7 339,281 - +0.5 339,284 - -1.5 339,284 - -0.8 339,284 - -0.9 339,683 - SM_b20334 0.24 -0.0 339,737 + SM_b20334 0.30 +0.2 339,737 + SM_b20334 0.30 -0.2 339,738 - SM_b20334 0.30 -0.8 339,738 - SM_b20334 0.30 +0.6 339,739 + SM_b20334 0.30 -1.0 339,739 + SM_b20334 0.30 +0.5 339,740 - SM_b20334 0.30 +0.3 339,740 - SM_b20334 0.30 +0.0 339,755 - SM_b20334 0.32 +1.3 339,843 + SM_b20334 0.41 +0.5 339,844 - SM_b20334 0.42 +0.0 339,862 - SM_b20334 0.44 -1.6 339,862 - SM_b20334 0.44 -0.3 339,989 + SM_b20334 0.57 -1.3 339,989 + SM_b20334 0.57 -0.6 339,989 + SM_b20334 0.57 -0.4 340,022 + SM_b20334 0.61 -1.1 340,023 - SM_b20334 0.61 +2.4 340,023 - SM_b20334 0.61 -0.8 340,086 + SM_b20334 0.68 -1.6 340,087 - SM_b20334 0.68 +1.0 340,126 - SM_b20334 0.72 +0.6 340,281 + SM_b20334 0.89 -1.1 340,282 - SM_b20334 0.90 -0.1 340,282 - SM_b20334 0.90 -0.2 340,282 - SM_b20334 0.90 -0.1 340,375 - +0.3 340,405 - +1.1 340,459 + +0.6 340,460 - +0.4 340,460 - +0.2 340,475 + +0.2 340,619 + +0.4 340,620 - -2.6 340,646 + -0.3 340,652 - +1.0 341,065 + SM_b20335 0.37 -0.0 341,065 + SM_b20335 0.37 -2.0 341,127 + SM_b20335 0.41 -0.7 341,127 + SM_b20335 0.41 -1.2 341,127 + SM_b20335 0.41 +0.4 341,127 + SM_b20335 0.41 +0.4 341,127 + SM_b20335 0.41 -1.9 341,127 + SM_b20335 0.41 +0.2 341,127 + SM_b20335 0.41 -1.8 341,128 - SM_b20335 0.41 -0.4 341,128 - SM_b20335 0.41 -0.2 341,128 - SM_b20335 0.41 +1.2 341,128 - SM_b20335 0.41 -0.6 341,128 - SM_b20335 0.41 +0.2 341,169 + SM_b20335 0.45 -0.1 341,169 + SM_b20335 0.45 -3.5 341,170 - SM_b20335 0.45 +2.0 341,173 + SM_b20335 0.45 -0.2 341,173 + SM_b20335 0.45 -0.3 341,173 + SM_b20335 0.45 -1.0 341,173 + SM_b20335 0.45 -1.0 341,195 - SM_b20335 0.47 -0.2 341,277 + SM_b20335 0.53 -0.6
Or see this region's nucleotide sequence