Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20317 and SM_b20318 are separated by 1 nucleotides SM_b20318 and SM_b20319 are separated by 50 nucleotides
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799
_b20319
Position (kb) 320
321
322 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 319.746 kb on - strand, within SM_b20317 at 319.834 kb on + strand, within SM_b20317 at 320.296 kb on + strand, within SM_b20317 at 320.297 kb on - strand, within SM_b20317 at 320.402 kb on + strand at 320.497 kb on - strand at 320.497 kb on - strand at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318 at 321.594 kb on - strand at 321.661 kb on + strand at 321.731 kb on + strand, within SM_b20319 at 321.733 kb on + strand, within SM_b20319 at 322.371 kb on + strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.376 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 319,746 - SM_b20317 0.51 +0.7 319,834 + SM_b20317 0.57 +0.5 320,296 + SM_b20317 0.87 +0.5 320,297 - SM_b20317 0.87 -1.6 320,402 + +1.6 320,497 - +0.4 320,497 - +0.4 320,595 + +1.5 320,595 + -2.4 320,596 - -0.2 320,753 + SM_b20318 0.25 +0.4 320,753 + SM_b20318 0.25 +0.6 320,753 + SM_b20318 0.25 +0.8 320,753 + SM_b20318 0.25 +0.4 320,785 + SM_b20318 0.28 -0.5 320,786 - SM_b20318 0.28 +0.2 320,786 - SM_b20318 0.28 +0.4 320,786 - SM_b20318 0.28 -1.6 320,812 + SM_b20318 0.30 -0.5 320,813 - SM_b20318 0.30 +1.2 320,813 - SM_b20318 0.30 +1.3 320,873 + SM_b20318 0.36 -0.2 321,083 - SM_b20318 0.56 +0.4 321,121 + SM_b20318 0.60 -0.1 321,122 - SM_b20318 0.60 -0.4 321,122 - SM_b20318 0.60 +1.1 321,122 - SM_b20318 0.60 +3.0 321,122 - SM_b20318 0.60 -0.3 321,123 + SM_b20318 0.60 -0.1 321,123 + SM_b20318 0.60 -0.3 321,123 + +1.4 321,154 - SM_b20318 0.63 -0.6 321,158 - SM_b20318 0.64 +1.1 321,235 + SM_b20318 0.71 -0.6 321,264 + SM_b20318 0.74 +0.9 321,265 - SM_b20318 0.74 +1.3 321,594 - -2.4 321,661 + +0.6 321,731 + SM_b20319 0.12 +0.5 321,733 + SM_b20319 0.12 -0.1 322,371 + SM_b20319 0.65 +0.8 322,372 - SM_b20319 0.65 +1.4 322,372 - SM_b20319 0.65 -0.2 322,376 - SM_b20319 0.65 -0.3 322,479 - SM_b20319 0.74 +1.4 322,479 - SM_b20319 0.74 +1.6 322,479 - SM_b20319 0.74 -0.4
Or see this region's nucleotide sequence