Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20292 and SM_b20293 are separated by 311 nucleotides SM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20294 and SM_b20295 are separated by 28 nucleotides
SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391
_b20292
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
Position (kb)
301
302 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 300.258 kb on + strand, within SM_b20292 at 300.262 kb on - strand, within SM_b20292 at 300.374 kb on - strand at 300.374 kb on - strand at 300.394 kb on - strand at 300.394 kb on - strand at 300.440 kb on + strand at 300.441 kb on - strand at 300.528 kb on + strand at 300.528 kb on + strand at 300.529 kb on - strand at 300.560 kb on + strand at 300.560 kb on + strand at 300.561 kb on - strand at 300.586 kb on - strand at 300.713 kb on + strand at 300.714 kb on - strand at 300.718 kb on + strand at 300.752 kb on - strand, within SM_b20293 at 300.849 kb on + strand, within SM_b20293 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294 at 301.871 kb on + strand at 301.872 kb on - strand at 301.872 kb on - strand at 301.876 kb on - strand at 301.907 kb on + strand at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 300,258 + SM_b20292 0.86 -0.9 300,262 - SM_b20292 0.87 -0.8 300,374 - -0.4 300,374 - +0.4 300,394 - +0.3 300,394 - +0.0 300,440 + -1.6 300,441 - -1.3 300,528 + -0.0 300,528 + -2.8 300,529 - +0.3 300,560 + -0.4 300,560 + +1.0 300,561 - +0.1 300,586 - +0.4 300,713 + -1.9 300,714 - +0.0 300,718 + -0.1 300,752 - SM_b20293 0.14 -0.2 300,849 + SM_b20293 0.41 -0.1 301,060 + -0.3 301,061 - -0.5 301,061 - +0.3 301,273 - SM_b20294 0.11 +1.5 301,357 - SM_b20294 0.23 -0.4 301,871 + +1.5 301,872 - -0.7 301,872 - -2.6 301,876 - -0.7 301,907 + +1.8 302,022 + SM_b20295 0.10 +0.4 302,130 + SM_b20295 0.21 -0.8 302,242 + SM_b20295 0.33 -1.4 302,243 - SM_b20295 0.33 -0.7 302,451 + SM_b20295 0.54 +2.8 302,451 + SM_b20295 0.54 -0.5 302,452 - SM_b20295 0.54 -0.4 302,452 - SM_b20295 0.54 -0.5 302,452 - SM_b20295 0.54 +0.2 302,506 + SM_b20295 0.60 -0.7 302,506 + SM_b20295 0.60 +0.1 302,506 + SM_b20295 0.60 +0.4 302,507 - SM_b20295 0.60 +0.7 302,507 - SM_b20295 0.60 +0.2 302,833 + +3.0
Or see this region's nucleotide sequence