Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20235 and SM_b20236 are separated by 119 nucleotides SM_b20236 and SM_b20238 are separated by 327 nucleotides SM_b20238 and SM_b20239 are separated by 2 nucleotides
SM_b20235: SM_b20235 - sugar ABC transporter ATP-binding protein, at 240,520 to 241,611
_b20235
SM_b20236: SM_b20236 - hypothetical protein, at 241,731 to 242,075
_b20236
SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197
_b20238
SM_b20239: SM_b20239 - dTDP-glucose 4,6-dehydratase, at 243,200 to 244,240
_b20239
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 241.424 kb on + strand, within SM_b20235 at 241.425 kb on - strand, within SM_b20235 at 241.689 kb on - strand at 241.689 kb on - strand at 241.856 kb on + strand, within SM_b20236 at 241.929 kb on - strand, within SM_b20236 at 241.935 kb on + strand, within SM_b20236 at 242.018 kb on - strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.049 kb on + strand at 242.182 kb on - strand at 242.221 kb on + strand at 242.221 kb on + strand at 242.222 kb on - strand at 242.241 kb on - strand at 242.383 kb on + strand at 242.384 kb on - strand at 242.474 kb on - strand at 242.755 kb on + strand, within SM_b20238 at 242.756 kb on - strand, within SM_b20238 at 242.869 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.947 kb on - strand, within SM_b20238 at 242.983 kb on + strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 243.077 kb on - strand, within SM_b20238 at 243.304 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.568 kb on - strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.685 kb on - strand, within SM_b20239 at 243.777 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.853 kb on - strand, within SM_b20239 at 244.065 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.148 kb on + strand at 244.148 kb on + strand at 244.159 kb on + strand at 244.159 kb on + strand at 244.160 kb on - strand at 244.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 241,424 + SM_b20235 0.83 +0.1 241,425 - SM_b20235 0.83 +0.2 241,689 - -0.0 241,689 - -0.5 241,856 + SM_b20236 0.36 +2.5 241,929 - SM_b20236 0.57 -0.3 241,935 + SM_b20236 0.59 -1.7 242,018 - SM_b20236 0.83 -0.8 242,035 + SM_b20236 0.88 -1.0 242,035 + SM_b20236 0.88 -0.5 242,049 + +0.3 242,182 - -1.3 242,221 + +1.2 242,221 + -1.2 242,222 - -0.2 242,241 - -1.0 242,383 + -2.9 242,384 - -0.6 242,474 - +0.2 242,755 + SM_b20238 0.44 +0.8 242,756 - SM_b20238 0.44 +0.1 242,869 + SM_b20238 0.59 -1.6 242,906 + SM_b20238 0.63 +0.4 242,906 + SM_b20238 0.63 -1.2 242,947 - SM_b20238 0.68 -1.7 242,983 + SM_b20238 0.73 +0.1 242,984 - SM_b20238 0.73 +0.1 242,984 - SM_b20238 0.73 +0.7 242,984 - SM_b20238 0.73 +0.1 242,984 - SM_b20238 0.73 -0.7 243,077 - SM_b20238 0.85 +1.2 243,304 + SM_b20239 0.10 +0.0 243,567 + SM_b20239 0.35 -2.5 243,567 + SM_b20239 0.35 -0.2 243,567 + SM_b20239 0.35 +0.2 243,567 + SM_b20239 0.35 -0.4 243,568 - SM_b20239 0.35 -0.1 243,684 + SM_b20239 0.46 +0.0 243,684 + SM_b20239 0.46 +0.9 243,685 - SM_b20239 0.47 -0.4 243,777 + SM_b20239 0.55 -0.9 243,816 + SM_b20239 0.59 +2.7 243,816 + SM_b20239 0.59 -1.2 243,817 - SM_b20239 0.59 -0.3 243,817 - SM_b20239 0.59 -0.9 243,817 - SM_b20239 0.59 +0.6 243,853 - SM_b20239 0.63 +0.1 244,065 + SM_b20239 0.83 -1.7 244,113 + SM_b20239 0.88 +0.2 244,113 + SM_b20239 0.88 +2.0 244,113 + SM_b20239 0.88 -1.6 244,114 - SM_b20239 0.88 +0.6 244,114 - SM_b20239 0.88 -0.0 244,148 + -0.1 244,148 + -0.1 244,159 + +2.1 244,159 + +0.3 244,160 - +1.6 244,160 - -0.7
Or see this region's nucleotide sequence