Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20225 and SM_b20226 are separated by 165 nucleotides SM_b20226 and SM_b20227 are separated by 156 nucleotides SM_b20227 and SM_b20228 overlap by 8 nucleotides
SM_b20225: SM_b20225 - osmotically inducible sensory protein, at 231,657 to 232,343
_b20225
SM_b20226: SM_b20226 - hypothetical protein, at 232,509 to 232,682
_b20226
SM_b20227: SM_b20227 - nutrient deprivation-induced protein, at 232,839 to 233,417
_b20227
SM_b20228: SM_b20228 - nutrient deprivation-induced protein, at 233,410 to 233,829
_b20228
Position (kb) 232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 231.612 kb on + strand at 231.850 kb on + strand, within SM_b20225 at 231.926 kb on - strand, within SM_b20225 at 232.075 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.094 kb on - strand, within SM_b20225 at 232.123 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.163 kb on - strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.265 kb on - strand, within SM_b20225 at 232.502 kb on + strand at 232.503 kb on - strand at 232.521 kb on + strand at 232.522 kb on - strand at 232.559 kb on - strand, within SM_b20226 at 232.650 kb on + strand, within SM_b20226 at 232.778 kb on - strand at 232.919 kb on - strand, within SM_b20227 at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.407 kb on - strand at 233.407 kb on - strand at 233.415 kb on + strand at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.617 kb on + strand, within SM_b20228
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 231,612 + -0.3 231,850 + SM_b20225 0.28 +1.8 231,926 - SM_b20225 0.39 -0.8 232,075 + SM_b20225 0.61 -0.2 232,093 + SM_b20225 0.63 -0.3 232,093 + SM_b20225 0.63 +0.5 232,094 - SM_b20225 0.64 +0.1 232,123 + SM_b20225 0.68 +0.6 232,162 + SM_b20225 0.74 +0.4 232,162 + SM_b20225 0.74 -0.7 232,162 + SM_b20225 0.74 -0.4 232,163 - SM_b20225 0.74 +0.4 232,264 + SM_b20225 0.88 -1.7 232,264 + SM_b20225 0.88 -0.5 232,265 - SM_b20225 0.89 +0.3 232,502 + +1.2 232,503 - -0.0 232,521 + +0.4 232,522 - -1.6 232,559 - SM_b20226 0.29 +1.7 232,650 + SM_b20226 0.81 +0.4 232,778 - -0.9 232,919 - SM_b20227 0.14 +1.7 233,406 + -0.1 233,406 + -1.7 233,406 + +0.4 233,406 + +1.3 233,407 - +0.4 233,407 - +0.5 233,415 + -0.5 233,469 + SM_b20228 0.14 +2.5 233,469 + SM_b20228 0.14 -0.1 233,469 + SM_b20228 0.14 -0.6 233,471 + SM_b20228 0.15 -0.0 233,471 + SM_b20228 0.15 -1.0 233,472 - SM_b20228 0.15 +0.1 233,472 - SM_b20228 0.15 -1.6 233,617 + SM_b20228 0.49 -2.4
Or see this region's nucleotide sequence