Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20099 and SM_b20100 are separated by 1 nucleotides SM_b20100 and SM_b20101 are separated by 60 nucleotides
SM_b20099: SM_b20099 - maltose alpha-D-glucosyltransferase, at 107,125 to 108,759
_b20099
SM_b20100: SM_b20100 - dehydrogenase, at 108,761 to 109,747
_b20100
SM_b20101: SM_b20101 - hydroxyglutarate oxidase, at 109,808 to 111,088
_b20101
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 107.762 kb on + strand, within SM_b20099 at 107.763 kb on - strand, within SM_b20099 at 108.133 kb on + strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.134 kb on - strand, within SM_b20099 at 108.192 kb on - strand, within SM_b20099 at 108.575 kb on + strand, within SM_b20099 at 108.992 kb on + strand, within SM_b20100 at 109.233 kb on - strand, within SM_b20100 at 109.424 kb on + strand, within SM_b20100 at 109.425 kb on - strand, within SM_b20100 at 109.528 kb on - strand, within SM_b20100 at 109.571 kb on + strand, within SM_b20100 at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.649 kb on + strand at 109.650 kb on - strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.796 kb on + strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.797 kb on - strand at 109.845 kb on - strand at 109.850 kb on + strand at 109.850 kb on + strand at 109.851 kb on - strand at 109.851 kb on - strand at 109.851 kb on - strand at 110.004 kb on - strand, within SM_b20101 at 110.004 kb on - strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.006 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.186 kb on + strand, within SM_b20101 at 110.187 kb on - strand, within SM_b20101 at 110.228 kb on - strand, within SM_b20101 at 110.513 kb on + strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.517 kb on - strand, within SM_b20101 at 110.562 kb on - strand, within SM_b20101
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 107,762 + SM_b20099 0.39 -1.3 107,763 - SM_b20099 0.39 +0.6 108,133 + SM_b20099 0.62 -0.6 108,134 - SM_b20099 0.62 -2.5 108,134 - SM_b20099 0.62 +0.3 108,192 - SM_b20099 0.65 -0.2 108,575 + SM_b20099 0.89 -0.4 108,992 + SM_b20100 0.23 -0.0 109,233 - SM_b20100 0.48 -1.1 109,424 + SM_b20100 0.67 -1.6 109,425 - SM_b20100 0.67 +1.4 109,528 - SM_b20100 0.78 -1.2 109,571 + SM_b20100 0.82 +1.2 109,649 + +0.5 109,649 + +0.3 109,649 + +0.3 109,649 + +2.3 109,649 + -0.2 109,650 - -1.2 109,796 + -0.3 109,796 + +0.2 109,796 + +1.2 109,796 + -0.3 109,796 + +0.4 109,797 - -0.1 109,797 - +0.5 109,797 - +0.2 109,797 - -0.3 109,845 - -0.3 109,850 + -0.1 109,850 + -1.6 109,851 - +0.5 109,851 - -1.2 109,851 - +0.3 110,004 - SM_b20101 0.15 -0.2 110,004 - SM_b20101 0.15 -1.4 110,006 + SM_b20101 0.15 -0.2 110,006 + SM_b20101 0.15 +0.0 110,006 + SM_b20101 0.15 -0.0 110,186 + SM_b20101 0.30 +0.6 110,186 + SM_b20101 0.30 -1.2 110,186 + SM_b20101 0.30 -0.2 110,187 - SM_b20101 0.30 +0.2 110,228 - SM_b20101 0.33 +0.0 110,513 + SM_b20101 0.55 +2.5 110,517 - SM_b20101 0.55 +1.1 110,517 - SM_b20101 0.55 -1.1 110,562 - SM_b20101 0.59 +0.4
Or see this region's nucleotide sequence