Experiment: Paraquat dichloride 0.3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20019 and SM_b20020 are separated by 2 nucleotides SM_b20020 and SM_b20021 are separated by 116 nucleotides
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
SM_b20020: SM_b20020 - pyruvate dehydrogenase E1 component, subunits alpha and beta, at 27,345 to 29,423
_b20020
SM_b20021: SM_b20021 - transcriptional regulator, at 29,540 to 30,010
_b20021
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.378 kb on + strand at 28.057 kb on + strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020 at 28.058 kb on - strand, within SM_b20020 at 28.533 kb on - strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.534 kb on + strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.535 kb on - strand, within SM_b20020 at 28.597 kb on + strand, within SM_b20020 at 28.597 kb on + strand, within SM_b20020 at 28.781 kb on + strand, within SM_b20020 at 28.782 kb on - strand, within SM_b20020 at 28.843 kb on + strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.844 kb on - strand, within SM_b20020 at 28.982 kb on - strand, within SM_b20020 at 29.016 kb on - strand, within SM_b20020 at 29.016 kb on - strand, within SM_b20020 at 29.017 kb on + strand, within SM_b20020 at 29.194 kb on + strand, within SM_b20020 at 29.278 kb on + strand at 29.540 kb on - strand at 29.584 kb on - strand at 29.843 kb on + strand, within SM_b20021 at 29.987 kb on + strand at 29.987 kb on + strand at 29.988 kb on - strand at 30.008 kb on + strand at 30.170 kb on - strand at 30.170 kb on - strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.189 kb on + strand at 30.190 kb on - strand at 30.196 kb on + strand at 30.196 kb on + strand at 30.197 kb on - strand at 30.370 kb on + strand at 30.371 kb on - strand at 30.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.3 mg/ml remove 26,615 - SM_b20019 0.36 +0.1 26,615 - SM_b20019 0.36 -0.1 26,615 - SM_b20019 0.36 +0.4 26,622 + SM_b20019 0.37 +0.7 26,623 - SM_b20019 0.37 -1.8 26,718 - SM_b20019 0.45 -0.6 26,726 + SM_b20019 0.46 +1.1 26,850 + SM_b20019 0.57 +0.4 26,850 + SM_b20019 0.57 -0.6 26,851 - SM_b20019 0.57 -0.9 26,851 - SM_b20019 0.57 +0.9 26,851 - SM_b20019 0.57 -0.5 26,888 - SM_b20019 0.60 -0.5 26,888 - SM_b20019 0.60 -0.0 27,041 + SM_b20019 0.73 -1.1 27,042 - SM_b20019 0.74 -2.8 27,042 - SM_b20019 0.74 -0.0 27,378 + -1.3 28,057 + SM_b20020 0.34 -0.4 28,058 - SM_b20020 0.34 +0.4 28,058 - SM_b20020 0.34 -0.4 28,533 - SM_b20020 0.57 +1.0 28,534 + SM_b20020 0.57 -1.2 28,534 + SM_b20020 0.57 +0.4 28,534 + SM_b20020 0.57 +1.9 28,535 - SM_b20020 0.57 -0.5 28,535 - SM_b20020 0.57 -0.4 28,535 - SM_b20020 0.57 -1.0 28,535 - SM_b20020 0.57 -1.4 28,535 - SM_b20020 0.57 -0.9 28,535 - SM_b20020 0.57 +0.1 28,535 - SM_b20020 0.57 +0.7 28,597 + SM_b20020 0.60 +0.2 28,597 + SM_b20020 0.60 +0.2 28,781 + SM_b20020 0.69 +0.3 28,782 - SM_b20020 0.69 -1.9 28,843 + SM_b20020 0.72 -1.2 28,844 - SM_b20020 0.72 +0.3 28,844 - SM_b20020 0.72 -0.3 28,844 - SM_b20020 0.72 +0.1 28,982 - SM_b20020 0.79 +0.5 29,016 - SM_b20020 0.80 -0.4 29,016 - SM_b20020 0.80 -1.5 29,017 + SM_b20020 0.80 -0.5 29,194 + SM_b20020 0.89 -1.7 29,278 + -1.1 29,540 - -0.9 29,584 - -2.8 29,843 + SM_b20021 0.64 -2.5 29,987 + -0.5 29,987 + -0.4 29,988 - -1.3 30,008 + +0.9 30,170 - +0.6 30,170 - -0.9 30,189 + -1.0 30,189 + -0.2 30,189 + -0.6 30,190 - -1.5 30,196 + +0.3 30,196 + -1.1 30,197 - +0.7 30,370 + +1.5 30,371 - +0.4 30,371 - +1.7
Or see this region's nucleotide sequence