Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18200 and RALBFv3_RS24350 are separated by 106 nucleotides RALBFv3_RS24350 and RALBFv3_RS24355 overlap by 101 nucleotides RALBFv3_RS24355 and RALBFv3_RS18205 are separated by 28 nucleotides RALBFv3_RS18205 and RALBFv3_RS18210 are separated by 336 nucleotides RALBFv3_RS18210 and RALBFv3_RS18215 are separated by 103 nucleotides
RALBFv3_RS18200: RALBFv3_RS18200 - MFS transporter, at 610,602 to 611,876
_RS18200
RALBFv3_RS24350: RALBFv3_RS24350 - hypothetical protein, at 611,983 to 612,216
_RS24350
RALBFv3_RS24355: RALBFv3_RS24355 - hypothetical protein, at 612,116 to 612,429
_RS24355
RALBFv3_RS18205: RALBFv3_RS18205 - hypothetical protein, at 612,458 to 612,697
_RS18205
RALBFv3_RS18210: RALBFv3_RS18210 - hypothetical protein, at 613,034 to 613,285
_RS18210
RALBFv3_RS18215: RALBFv3_RS18215 - acid phosphatase, at 613,389 to 615,545
_RS18215
Position (kb) 612
613 Strain fitness (log2 ratio) -1
0
1
2 at 611.320 kb on + strand, within RALBFv3_RS18200 at 611.320 kb on + strand, within RALBFv3_RS18200 at 611.321 kb on - strand, within RALBFv3_RS18200 at 611.321 kb on - strand, within RALBFv3_RS18200 at 611.344 kb on + strand, within RALBFv3_RS18200 at 611.344 kb on + strand, within RALBFv3_RS18200 at 611.344 kb on + strand, within RALBFv3_RS18200 at 611.344 kb on + strand, within RALBFv3_RS18200 at 611.345 kb on - strand, within RALBFv3_RS18200 at 611.345 kb on - strand, within RALBFv3_RS18200 at 611.698 kb on + strand, within RALBFv3_RS18200 at 611.698 kb on + strand, within RALBFv3_RS18200 at 611.698 kb on + strand, within RALBFv3_RS18200 at 611.720 kb on - strand, within RALBFv3_RS18200 at 612.001 kb on - strand at 612.308 kb on + strand, within RALBFv3_RS24355 at 612.308 kb on + strand, within RALBFv3_RS24355 at 612.309 kb on - strand, within RALBFv3_RS24355 at 612.309 kb on - strand, within RALBFv3_RS24355 at 612.309 kb on - strand, within RALBFv3_RS24355 at 612.309 kb on - strand, within RALBFv3_RS24355 at 612.522 kb on + strand, within RALBFv3_RS18205 at 612.522 kb on + strand, within RALBFv3_RS18205 at 612.523 kb on - strand, within RALBFv3_RS18205 at 612.579 kb on + strand, within RALBFv3_RS18205 at 612.579 kb on + strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.580 kb on - strand, within RALBFv3_RS18205 at 612.926 kb on + strand at 612.927 kb on - strand at 613.033 kb on + strand at 613.034 kb on - strand at 613.045 kb on + strand at 613.046 kb on - strand at 613.046 kb on - strand at 613.049 kb on + strand at 613.050 kb on - strand at 613.050 kb on - strand at 613.140 kb on - strand, within RALBFv3_RS18210 at 613.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 611,320 + RALBFv3_RS18200 0.56 +0.0 611,320 + RALBFv3_RS18200 0.56 +0.4 611,321 - RALBFv3_RS18200 0.56 +0.3 611,321 - RALBFv3_RS18200 0.56 -0.4 611,344 + RALBFv3_RS18200 0.58 -0.7 611,344 + RALBFv3_RS18200 0.58 -0.7 611,344 + RALBFv3_RS18200 0.58 -1.1 611,344 + RALBFv3_RS18200 0.58 -0.5 611,345 - RALBFv3_RS18200 0.58 -0.6 611,345 - RALBFv3_RS18200 0.58 -0.0 611,698 + RALBFv3_RS18200 0.86 -1.0 611,698 + RALBFv3_RS18200 0.86 -0.2 611,698 + RALBFv3_RS18200 0.86 -0.1 611,720 - RALBFv3_RS18200 0.88 +0.6 612,001 - +0.4 612,308 + RALBFv3_RS24355 0.61 +1.1 612,308 + RALBFv3_RS24355 0.61 +2.1 612,309 - RALBFv3_RS24355 0.61 +1.5 612,309 - RALBFv3_RS24355 0.61 -0.5 612,309 - RALBFv3_RS24355 0.61 -0.5 612,309 - RALBFv3_RS24355 0.61 +0.4 612,522 + RALBFv3_RS18205 0.27 +0.1 612,522 + RALBFv3_RS18205 0.27 -0.5 612,523 - RALBFv3_RS18205 0.27 -0.6 612,579 + RALBFv3_RS18205 0.50 +0.2 612,579 + RALBFv3_RS18205 0.50 +1.9 612,580 - RALBFv3_RS18205 0.51 -1.0 612,580 - RALBFv3_RS18205 0.51 +0.2 612,580 - RALBFv3_RS18205 0.51 -0.4 612,926 + +0.1 612,927 - -0.1 613,033 + +2.2 613,034 - -0.0 613,045 + -0.1 613,046 - -0.1 613,046 - -1.3 613,049 + -1.7 613,050 - +0.1 613,050 - -0.1 613,140 - RALBFv3_RS18210 0.42 +0.3 613,284 - -0.1
Or see this region's nucleotide sequence